PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01025199001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 387aa MW: 42442 Da PI: 8.3796 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.1 | 2.1e-17 | 176 | 208 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C +C++t Tp+WR+gp+g+ktLCnaCG++y++ GSVIVT01025199001 176 CMHCNVTRTPQWREGPNGPKTLCNACGVCYKRG 208 99*****************************85 PP | |||||||
2 | GATA | 52.8 | 5.5e-17 | 299 | 332 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C + +TplWR+gp g+k+LCnaCG++y++ + GSVIVT01025199001 299 CMHCEAAQTPLWRQGPWGPKSLCNACGIRYKSGR 332 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.6E-11 | 170 | 220 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.3E-13 | 175 | 207 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.596 | 175 | 206 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.18E-12 | 175 | 222 | No hit | No description |
SuperFamily | SSF57716 | 5.23E-13 | 175 | 233 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 176 | 201 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.5E-14 | 176 | 208 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.6E-13 | 293 | 343 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.7E-14 | 297 | 330 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.28E-13 | 297 | 356 | No hit | No description |
PROSITE profile | PS50114 | 12.202 | 297 | 329 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.55E-11 | 298 | 345 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 299 | 324 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.1E-15 | 299 | 332 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MIDSGLFDEN GNGNDHSSDD MFDGIIDIFD FPMEDVDIGG EVEELQRESS PLNDLLALPC 60 PFSGNSCNDT SNLRTIPSDE APRTEPIVID TCSGNISLHG DSSDDKESLL LQNSTTSESG 120 KSASEPFAQT IEASEGYPNF MKGKQKKKKR KKLSLLSGAM GVKKQWWQQP ITIGRCMHCN 180 VTRTPQWREG PNGPKTLCNA CGVCYKRGSL FPEYRPASSP TFVPSLHTNS RRKVTEMRHK 240 AVSPIPVATL PSPHRKVIKM RSNGGQEAAM ATTPTFVASL HSNSHKKCSF QQPVTVRKCM 300 HCEAAQTPLW RQGPWGPKSL CNACGIRYKS GRLFPEYHPA ASPTFVASLH SNSHKKVLEM 360 RNQATQQQLS LAATDTAMSH PSQLIP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 150 | KKKKRK |
2 | 145 | 151 | KKKKRKK |
3 | 145 | 152 | KKKKRKKL |
4 | 147 | 151 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM438876 | 0.0 | AM438876.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X090426.6, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010651174.1 | 0.0 | PREDICTED: GATA transcription factor 8 | ||||
Refseq | XP_010651175.1 | 0.0 | PREDICTED: GATA transcription factor 8 | ||||
TrEMBL | F6GU15 | 0.0 | F6GU15_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g02740.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-33 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01025199001 |