PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01025100001 | ||||||||
Common Name | LOC100246815, VIT_06s0004g03590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | AP2 | ||||||||
Protein Properties | Length: 479aa MW: 51899.2 Da PI: 6.5651 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 137 | 186 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GSVIVT01025100001 137 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 186 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.2 | 4.1e-13 | 229 | 279 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g GSVIVT01025100001 229 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 279 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.82E-16 | 137 | 195 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.5E-9 | 137 | 186 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 138 | 194 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-17 | 138 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-33 | 138 | 200 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.63E-11 | 138 | 196 | No hit | No description |
CDD | cd00018 | 4.58E-26 | 229 | 289 | No hit | No description |
Pfam | PF00847 | 1.2E-8 | 229 | 279 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-17 | 229 | 288 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-15 | 230 | 287 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-32 | 230 | 293 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.527 | 230 | 287 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 231 | 242 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 269 | 289 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MLDLNLNVGS SDSTQHGDSV VGSEKFPEGS GTQMDESGTS NSSIVNAEAS SNGGGDDDSC 60 STRAGDAFSL NFDILKVGDC GSPNDVVTRQ LFPMSAGGGV GGDSVFFQGQ VAQQHPQPQQ 120 QQQPVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA 180 AIKFRGVDAD INFNLSDYDE DLKQMKNLTK EEFVHILRRQ STGFSRGSSK YRGVTLHKCG 240 RWEARMGQFL GKKYIYLGLF DSEVEAARAY DKAAIKCNGR EAVTNFEPST YEGEMIPEAS 300 NEGSDHNLDL NLGISPPLSN GPKEIDGLGH LQFHSGSHDA HNGRRSMMEN PNIETAGDPS 360 FKGLAMTSEH PPLWTGVYPS FFPGYEERAT ERRIEASSSQ GLPNWGWQMH GQVTATPMPL 420 FSTAASSGFS SSATTAPSAA ILSSKPPNTT SHSICFASSA SAVTHPSQYY FQMKPPPP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.3474 | 0.0 | bud| fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM437918 | 0.0 | AM437918.1 Vitis vinifera contig VV78X091249.7, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002284749.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
Swissprot | Q9SK03 | 1e-119 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A438KP41 | 0.0 | A0A438KP41_VITVI; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | F6GTW6 | 0.0 | F6GTW6_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g03590.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-129 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01025100001 |
Entrez Gene | 100246815 |