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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSVIVT01025034001 |
| Common Name | VIT_06s0004g04140 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
| Family |
MYB |
| Protein Properties |
Length: 236aa MW: 27241.8 Da PI: 8.1237 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01025034001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+ Ed +lv+ v ++G ++W+ Ia+ g++Rt+k+c++rw +yl
GSVIVT01025034001 8 KGPWTEKEDFQLVCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+ E+ l ++++ q+G++ W++Iar+++ gRt++++k++w++++
GSVIVT01025034001 61 RGKMTPHEERLVLELHSQWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
89********************.*********.************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MVQEEIRKGP WTEKEDFQLV CFVGLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK 60
RGKMTPHEER LVLELHSQWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERKRAISPS 120
SPSSNCSSSA PHNPKALAPT GKKTEEEKEA DKGYSMDDIW KDIAFSEENT IKPVYDGYKE 180
EGCDFACPPN PMASPVWDYC PDSLWRMDEE ESKMFLPMSD QFISSYEHGM ASLTG*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM454606 | 1e-168 | AM454606.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X103470.3, clone ENTAV 115. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP5 | 17 | 1784 |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Hickman R, et al.
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
Plant Cell, 2017. 29(9): p. 2086-2105
[PMID:28827376]
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