PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024936001
Common NameLOC100257090, VIT_06s0004g04940
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 647aa    MW: 71184.8 Da    PI: 9.62
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024936001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07547596147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  GSVIVT01024936001 547 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 596
                        678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.11E-7351440IPR029071Ubiquitin-related domain
PROSITE profilePS500539.374355425IPR000626Ubiquitin domain
PROSITE profilePS5129414.453542601IPR017930Myb domain
SMARTSM007171.2E-7546599IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-10547597IPR009057Homeodomain-like
SuperFamilySSF466891.11E-15548629IPR009057Homeodomain-like
CDDcd116605.21E-17548598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPATP RATRSARRRG LFRKKVEDNQ MFAFDLLATV AGKLLLEGEK  60
SPDSVNTSNG KEQCVIAEDQ VKNEGHAEDK PLKIEPCDQG NSGGSFIVSE LSSQMPSQKY  120
CLREFPRPQN DACSALASVI TSDCSEKVGC AEKLVIGNGK NETESFASKV EIKVEPIKTG  180
RAILNTGAGI DNIPCGSFPL CRGDVKVVSR DDDDNSSGCT QPSTSTKSFR PLPRIGDRRI  240
RKLLASKYWK VTPKLKEDGL SNVDGEVKPI YRNKRNCYKR QRSQRNYPFK KRKLLYCSSV  300
SNSEGGNGSQ RISDSPQMGI NSDASGSGLK LHGGISTSAS VAGQHTSFIS RDSHVKLRIK  360
SFRVPELFIE IPETATVGSL KRTVMEAVTA ILGGGLRVGV LLRGKKVRDD SKTLQQTGIS  420
QDDQMDALGF TLEPNPSQAP QALCPGDNPF LLPYDTPQPL KRYPPTPTVA HQGTSDASPD  480
PPVTNLCDFV ESDHDSAPSP DTDMSIDKSV TDSKALVSVP AMSMEALAVV PVHRKSKRSE  540
IVQRRIRRPF SVSEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA  600
RISPQQRRGE PVPQELLDRV LTAHAYWSQQ QAKQQLKHQS ETCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-585316371107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236242DRRIRKL
2278293KRQRSQRNYPFKKRKL
3283292QRNYPFKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.31450.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4493370.0AM449337.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X220362.9, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283389.20.0PREDICTED: telomere repeat-binding protein 5
SwissprotQ6R0E31e-174TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLF6GV030.0F6GV03_VITVI; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-147TRF-like 2