PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024916001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 396aa    MW: 44091 Da    PI: 7.8149
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024916001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.61.6e-29231284155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFv++v +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  GSVIVT01024916001 231 RPRLVWTPQLHKRFVDVVGHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 284
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.503228287IPR017930Myb domain
SuperFamilySSF466892.69E-19228288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-29230289IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-23232284IPR006447Myb domain, plants
PfamPF002496.0E-7234283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MKLQLCPPLI NISFLSSFQI FFSQFSFLST LGFFLPLNAK IHQIIHSKIH QIFASSYSPY  60
LWPTILGFCG AIWTISLLGF ISRTTLFWRH RGIIRGWCMS FQRWVLSSTN SMGEEVRMSD  120
INGGDGGDDE RVLEWEAGLP AADDLTPLSQ PLIPPELASA FSITPEPCRT LLEVNRASQS  180
TFSTIRGQSH SFSSNNFKSF NEERNREPAE ADSAMRTENS NDDPSARTLK RPRLVWTPQL  240
HKRFVDVVGH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYLKRMQ GLSNEGPSSS  300
DHLFASTPVP QSLHESGGSV HGNGHGNGHM SVPIPMPYGQ TMMHMPVLGV SHGHGQMGMS  360
GPGGYHGYES HHPYNMLQQR DWSVVSYPNV GPNDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-33231287157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.192670.0flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4558280.0AM455828.2 Vitis vinifera contig VV78X164092.8, whole genome shotgun sequence.
GenBankFQ3906690.0FQ390669.1 Vitis vinifera clone SS0AEB17YA18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650997.10.0PREDICTED: transcription factor PCL1
SwissprotQ9SNB47e-86PCL1_ARATH; Transcription factor LUX
TrEMBLA5BDT90.0A5BDT9_VITVI; Uncharacterized protein
STRINGVIT_06s0004g05120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.22e-82G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]