PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01024902001 | ||||||||
Common Name | LOC104879616, VIT_06s0004g05260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 20968.4 Da PI: 7.5066 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.3e-05 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H GSVIVT01024902001 30 YECTFCKRGFSTAQALGGHMNIH 52 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.18E-7 | 27 | 57 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.4E-5 | 27 | 56 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.6E-7 | 30 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.51 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0099 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
METDHQTLET TSDQVVCTSD DQGPSQARSY ECTFCKRGFS TAQALGGHMN IHRKDKAKLK 60 KASNEAQQYS LDITKPASLF SPIPTNAKDP LQAMYSEERS KIAWPNWIVS GEDTTIRAQT 120 RVGEPQKLTF LGETPSNTRD RMLTSQDMIS TVNAGKGLSS GQGSSGAELD LELRLGPEPH 180 GPSKATGTKK FF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM446019 | 0.0 | AM446019.2 Vitis vinifera contig VV78X070138.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010651444.1 | 1e-143 | PREDICTED: transcriptional regulator TAC1-like | ||||
TrEMBL | D7SKA4 | 1e-141 | D7SKA4_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g05260.t01 | 1e-142 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1998 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 3e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01024902001 |
Entrez Gene | 104879616 |