PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01024778001 | ||||||||
Common Name | VIT_06s0004g06240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 334aa MW: 36918.9 Da PI: 8.0596 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5.2e-06 | 92 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp Cg++F + nL++H+ + H GSVIVT01024778001 92 FPCPACGEVFQKPQNLEQHQALkH 115 89******************9888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.367 | 92 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.53E-14 | 117 | 332 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 6.9E-6 | 129 | 234 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene3D | G3DSA:3.90.228.10 | 6.2E-5 | 264 | 332 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence Send to blast |
MDSRSRSRNA LSSSWFYLKK IFASKPCTAS MDTQPATATV SSARSSLHSV VSVVLPEMMV 60 VSDPQRKVPT ATRPESDISA DHQFFPLRND IFPCPACGEV FQKPQNLEQH QALKHAVSEL 120 IDGDSGNNIV RIIFKTGWTD SEKIPKIQRI LKIHNSSKIL ARFEEYRESV KSKAARNGAV 180 RRRDERCIAD GNELLRFHCS TFLCNLGQNG NSSVCNHQYC SVCGIIRTGF SPKLDGISTL 240 STSWRAHATI PEDIEDEFRF MNVKRAMLVC RVVAGRIGSD QDEVDKEDGG FDSVVGRSAI 300 GGGGSLTRLV DDEELLVFNP RSVLPCFVIV YSV* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Vvi.15746 | 0.0 | bud| fruit| inflorescence |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FQ395471 | 0.0 | FQ395471.1 Vitis vinifera clone SS0AFA15YM01. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279930.1 | 0.0 | PREDICTED: uncharacterized protein LOC100248366 | ||||
TrEMBL | D7SK11 | 0.0 | D7SK11_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g06240.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9661 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-108 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01024778001 |