PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01024687001 | ||||||||
Common Name | VIT_06s0004g07000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | G2-like | ||||||||
Protein Properties | Length: 178aa MW: 20137.7 Da PI: 9.2088 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.9 | 1.8e-31 | 67 | 120 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk + +lm++kgL+++hvkSHLQ+YR+ GSVIVT01024687001 67 PRLRWTPNLHLCFVRAVERLGGQERATPKLVQQLMNIKGLSIAHVKSHLQMYRS 120 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-29 | 63 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.239 | 63 | 123 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-14 | 65 | 121 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-22 | 67 | 122 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.9E-9 | 68 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007520 | developmental stage | root development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MERSMEESGK DDGSKTIDPF DGKDDEQEDD GNKTKTSVSS GNSVVDQESE KKTTSNGVRQ 60 YVRSKVPRLR WTPNLHLCFV RAVERLGGQE RATPKLVQQL MNIKGLSIAH VKSHLQMYRS 120 KKIDDKGQVI NSRGQLHPNG SAVHNLWQLP TFESIDQRVG FNFRYKTMCA CFDLYKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-18 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-18 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-18 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 68 | 122 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-18 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-18 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-18 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-18 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-18 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-18 | 68 | 122 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM444312 | 1e-147 | AM444312.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X133795.13, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278456.1 | 1e-118 | PREDICTED: uncharacterized protein LOC100246669 | ||||
TrEMBL | D7SJT9 | 1e-131 | D7SJT9_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g07000.t01 | 1e-131 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 8e-49 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01024687001 |