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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01024559001 |
Common Name | VIT_06s0004g08100 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
B3 |
Protein Properties |
Length: 709aa MW: 78812.4 Da PI: 8.0291 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01024559001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 58.6 | 1.1e-18 | 297 | 396 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f+kvl+ sd+++ grlvlpk +ae++ +++ e+ l+++d +g +W++++++ +++s++yvl+ G ++ +L++gD+v+F++++
GSVIVT01024559001 297 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPLRVQDAKGTEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTVIFSRID-P 386
99**************************555556677***************9989999999***9.********************887.6 PP
EE..EEEEE- CS
B3 89 efelvvkvfr 98
+ +lv++ ++
GSVIVT01024559001 387 GNKLVIGCRK 396
7777877766 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 709 aa
Download sequence Send
to blast |
MGSRICKNKW CGTTASFEWK KGWTIKSGAV VDLCYKCGSA YENLVFCETF HQEEDGWRQC 60 SLCHKRIHCG CIVSNYQFEA LDYGGVRCSS CLKSPQCHPV RSDNFMQLGK TMEADELNHL 120 LQSQKGDANV SLGQIKQDDS MHAVREVNTI FPTTSLPSIG PSEFAKSDNS IPMLMGKDVY 180 ESLVQPSLNI SLSSSSGPPN FLLPFPGNAV EGMEHSKSAF TFQQGQRTRH ILPKPPNSSL 240 SIGSEANKSM VPEIRIARPP AEGRGRNQLL PRYWPRITDQ ELQQLSGDLN STIVPLFEKV 300 LSASDAGRIG RLVLPKACAE AYFPPISQSE GLPLRVQDAK GTEWTFQFRF WPNNNSRMYV 360 LEGVTPCIQS MQLRAGDTVI FSRIDPGNKL VIGCRKASNC VDVQDAQTSA LSNGTIYGGS 420 SFSSVTENLS TCAGKMNEDS PQQSLLIPEK KRTRNIGSKN KRLLMHSEDA LELKITWQET 480 QDILRPPPSV EPNIVTIEGY EIEEYTEPPV FGKRSIFTAR PSGGQDQWGQ CDNCSKWRKL 540 PIDVFLPLKW TCADNIWDLS RCSCSAPDEW NPKESESLSR LGKDYKRQKS MESHKLAQEG 600 EPTGLDALAN AAVLEENGGD SGEPSAEATT RHPRHRPGCS CIVCIQPPSG KGKHKSTCIC 660 NVCMTVKRRF RTLMLRKKKR QSEHEAESSQ IKHQIHPINE SEISGMKR*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 666 | 677 | KRRFRTLMLRKK |
2 | 666 | 679 | KRRFRTLMLRKKKR |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and at lower levels in roots, stems and leaves. {ECO:0000269|PubMed:15894743}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM441534 | 0.0 | AM441534.1 Vitis vinifera contig VV78X035471.3, whole genome shotgun sequence. |
Publications
? help Back to Top |
- Jia H,McCarty DR,Suzuki M
Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] - Schneider A, et al.
Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developing Arabidopsis thaliana embryos. Plant J., 2016. 85(2): p. 305-19 [PMID:26678037] - Chhun T, et al.
HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth. Plant Cell Physiol., 2016. 57(8): p. 1689-706 [PMID:27335347] - Qüesta JI,Song J,Geraldo N,An H,Dean C
Arabidopsis transcriptional repressor VAL1 triggers Polycomb silencing at FLC during vernalization. Science, 2016. 353(6298): p. 485-8 [PMID:27471304] - Yuan W, et al.
A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis. Nat. Genet., 2016. 48(12): p. 1527-1534 [PMID:27819666] - Merini W, et al.
The Arabidopsis Polycomb Repressive Complex 1 (PRC1) Components AtBMI1A, B, and C Impact Gene Networks throughout All Stages of Plant Development. Plant Physiol., 2017. 173(1): p. 627-641 [PMID:27837089] - Li C,Cui Y
A DNA element that remembers winter. Nat. Genet., 2016. 48(12): p. 1451-1452 [PMID:27898079] - Chen N,Veerappan V,Abdelmageed H,Kang M,Allen RD
HSI2/VAL1 Silences AGL15 to Regulate the Developmental Transition from Seed Maturation to Vegetative Growth in Arabidopsis. Plant Cell, 2018. 30(3): p. 600-619 [PMID:29475938] - Sasnauskas G,Kauneckaite K,Siksnys V
Structural basis of DNA target recognition by the B3 domain of Arabidopsis epigenome reader VAL1. Nucleic Acids Res., 2018. 46(8): p. 4316-4324 [PMID:29660015] - Wu B, et al.
Structural insight into the role of VAL1 B3 domain for targeting to FLC locus in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(2): p. 415-422 [PMID:29733847]
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