PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024383001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 321aa    MW: 36073.6 Da    PI: 9.6967
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024383001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.9e-32147200255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSVIVT01024383001 147 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 200
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-15144201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28145200IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23147201IPR006447Myb domain, plants
PfamPF002491.9E-7148199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNTK PTSSWTTPSS RKPDTASDLS LANPKALEPS SNHIHALHPK  60
YHTLLAPPQL QQKYHHHQEG LHQQIGFLRP IRGIPIYQST PPSFSFPHQH SLDSSPSTIS  120
TTCFNSNGLQ RSRFISRFPT KRSMRAPRMR WTTTLHARFV HAVELLGGHE RATPKSVLEL  180
MDVKDLTLAH VKSHLQMYRT IKTTDRPPAS SGQLDGLEGR LAGELSEDNM VDIEKNPQRC  240
ELVHQSRLGF DQDLDSCSLW KNSSRDDAWL HGKPRDSRGS TTPFEDTASH ERVVMDVNST  300
SFSRMSPKKP NLEFTLGRSQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16148202458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.122380.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4882990.0AM488299.1 Vitis vinifera contig VV78X017825.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272637.10.0PREDICTED: probable transcription factor KAN2
TrEMBLA0A438G3L80.0A0A438G3L8_VITVI; Putative transcription factor KAN2
STRINGVIT_16s0039g01900.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-56G2-like family protein