PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024173001
Common NameLOC100257242, VIT_03s0038g00690
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family DBB
Protein Properties Length: 211aa    MW: 23371.4 Da    PI: 6.4087
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024173001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61e-07433534
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                        C+ +e+  ++lfC  ++  lC+ C ++ H
  GSVIVT01024173001  4 LCDACESAAAILFCAADEAALCRACDEKVH 33
                       7**************************998 PP
2zf-B_box28.72.8e-095291237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                       + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  GSVIVT01024173001 52 DVPRCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrtH 91
                       5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.7E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.338147IPR000315B-box-type zinc finger
PfamPF006433.3E-6341IPR000315B-box-type zinc finger
CDDcd000211.08E-6345No hitNo description
SMARTSM003364.5E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.0445196IPR000315B-box-type zinc finger
PfamPF006431.3E-75285IPR000315B-box-type zinc finger
CDDcd000212.73E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRTLCDACES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPAFFYCEV DGTSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGR LEELRLQSGE  120
PGEARREQNW PPMMTLRETQ PNHMASSVPM LENNTHGDGK MDNKLIDLNA RPQRVHGQTS  180
NNQSMDVHSG TNHESESVVP VGSFKREPEK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.153620.0bud| fruit| inflorescence| root
Vvi.78250.0bud| flower| fruit| inflorescence| leaf| pedicel| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3830830.0FQ383083.1 Vitis vinifera clone SS0ABG32YD22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267957.11e-157PREDICTED: B-box zinc finger protein 19
SwissprotC0SVM54e-89BBX19_ARATH; B-box zinc finger protein 19
TrEMBLD7U5G91e-156D7U5G9_VITVI; Uncharacterized protein
STRINGVIT_03s0038g00690.t011e-157(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-91DBB family protein