PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024162001
Common NameLOC100233069, VIT_03s0038g00840
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family BBR-BPC
Protein Properties Length: 249aa    MW: 28289.1 Da    PI: 9.6828
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024162001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind61.53.7e-191108192
          GAGA_bind   1 mdddgsre..rnkg.yye...............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkal 74 
                        mdd g+re  r+k  yy+               ++++l   ++++++ ++aerd++irern+alsekkaa+ erd+a++qrd+a++er++al
  GSVIVT01024162001   1 MDDGGQREngRHKLdYYKgpqnpwnmmpqhhlkEQNAL--TMNKKVVNILAERDNAIRERNIALSEKKAALEERDEALMQRDAAISERDNAL 90 
                        99***9999999998***********975544222333..4999************************************************ PP

          GAGA_bind  75 verdnkllalllvensla 92 
                        +erdn+++al ++e s +
  GSVIVT01024162001  91 LERDNAIAALRYRESSRK 108
                        ***********9998754 PP
2GAGA_bind265.23.6e-81106248155301
          GAGA_bind 155 rakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPv 246
                        + k++ke+  k+ kk +e+ +++v +++   + k+e++s+dl+ln v++Dest+PvPvCsCtG++rqCYkWGnGGWqS+CCttt+S yPLP+
  GSVIVT01024162001 106 SRKRTKEN--KAGKKVNEDLNRQVISDG--LKIKSEWDSQDLGLNLVTFDESTMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTTLSSYPLPQ 193
                        22333333..333444466666666666..78************************************************************ PP

          GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                        ++++r+aR++grKmS+++f++lL++LaaeG+dls p+DLkd+WAkHGtn+++ i+
  GSVIVT01024162001 194 MPNKRHARMGGRKMSGSVFTRLLSRLAAEGHDLSMPLDLKDYWAKHGTNRYIIIK 248
                        ****************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.8E-1311248IPR010409GAGA-binding transcriptional activator
PfamPF062171.3E-121104IPR010409GAGA-binding transcriptional activator
PfamPF062176.0E-79106248IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDDGGQRENG RHKLDYYKGP QNPWNMMPQH HLKEQNALTM NKKVVNILAE RDNAIRERNI  60
ALSEKKAALE ERDEALMQRD AAISERDNAL LERDNAIAAL RYRESSRKRT KENKAGKKVN  120
EDLNRQVISD GLKIKSEWDS QDLGLNLVTF DESTMPVPVC SCTGVPRQCY KWGNGGWQSS  180
CCTTTLSSYP LPQMPNKRHA RMGGRKMSGS VFTRLLSRLA AEGHDLSMPL DLKDYWAKHG  240
TNRYIIIK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.123930.0cell culture| fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5977440.0EU597744.1 Vitis vinifera GAGA-binding transcriptional activator BBR/BPC4-like gene, complete cds.
GenBankEU5977450.0EU597745.1 Vitis vinifera GAGA-binding transcriptional activator BBR/BPC4-like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268018.11e-175GAGA-binding transcriptional activator BBR/BPC4-like
RefseqXP_019073233.11e-175PREDICTED: GAGA-binding transcriptional activator BBR/BPC4-like isoform X1
RefseqXP_019073237.11e-175PREDICTED: GAGA-binding transcriptional activator BBR/BPC4-like isoform X1
SwissprotQ8S8C61e-126BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A438I9K71e-174A0A438I9K7_VITVI; Protein basic pentacysteine 4
TrEMBLB2Z4561e-174B2Z456_VITVI; GAGA-binding transcriptional activator BBR/BPC4-like
STRINGVIT_03s0038g00840.t011e-175(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-128basic pentacysteine 4
Publications ? help Back to Top
  1. Santi L, et al.
    The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.
    Plant J., 2003. 34(6): p. 813-26
    [PMID:12795701]