PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024160001
Common NameVIT_03s0038g00860
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 370aa    MW: 40564.9 Da    PI: 6.8095
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024160001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.21.3e-11211269563
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +a l+s++
  GSVIVT01024160001 211 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTSQN 269
                        9****************************************************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-18207271IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.921209272IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.9E-11211262No hitNo description
PfamPF001703.0E-10211269IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-11211268No hitNo description
CDDcd147031.68E-23212263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MRVGENLPPR KAHRRSSSDI PFGFSSIMQS SPPLIPLRGS GALERNAEGM GERKSEGEVV  60
DDLLSAYMNL DNIDALNSPG TEEKNGTENR EDLDSRASGT KTNGGDSSDN EAESSREGVK  120
RSAGGDIAPT TRHYRSVSMD SFMGKMNFGD ESPKLLPSPG TRPGQLSPSN SMDGNSATFS  180
LEFGNGEFSG AELKKIMANE KLAEIALTDP KRAKRILANR QSAARSKERK MRYISELEHK  240
VQTLQTEATT LSAQLTLLQR DSAGLTSQNN ELKFRLQAME QQAQLRDALN EALTAEVQRL  300
KLATAELGGE SQASKCLVPQ LSVNPQMFHL HHQQPTQLNI HQLQQQQQQQ HNQQQQQNGS  360
TTTKHESNQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.75000.0bud| cell culture| flower| fruit| inflorescence| pedicel| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3807240.0FQ380724.1 Vitis vinifera clone SS0ACG36YN15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647562.10.0PREDICTED: uncharacterized protein LOC100255631 isoform X2
RefseqXP_010647563.10.0PREDICTED: uncharacterized protein LOC100255631 isoform X3
RefseqXP_010647567.10.0PREDICTED: uncharacterized protein LOC100255631 isoform X3
TrEMBLA0A438DM910.0A0A438DM91_VITVI; Transcription factor RF2b
TrEMBLF6I1810.0F6I181_VITVI; Uncharacterized protein
STRINGVIT_03s0038g00860.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-120bZIP family protein