PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024084001
Common NameLOC100257183, VIT_03s0038g01790
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 330aa    MW: 36266 Da    PI: 6.2695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024084001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.5e-094695154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +++ +k+L
  GSVIVT01024084001 46 RKVQKADREKLRRDRLNEQFIELGNALDPD----RPKNDKATILSDTIQLLKDL 95
                       5677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.8684595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1345115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-1345118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-74695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-746100No hitNo description
SMARTSM003533.4E-751101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDHQNPEAFC QSTHYPPPDP RVSSTRSHPD SSKRSEGEFK DFVTARKVQK ADREKLRRDR  60
LNEQFIELGN ALDPDRPKND KATILSDTIQ LLKDLTAQVE KLKAENASLN EESRELTQEK  120
NDLREEKASL KSATENLNVQ YQQRLRAMFP WSAIDPSVVV SPPSYPFPVP VPVPIPTGSI  180
PMHPSMQPYP FFGSQNTGII PNPCSTFVPY FTPNTLIEPQ STQHVSPPMQ PGSTSNISSK  240
QDSKNESPGE SKSEKGEDST DVATDLQLKT PGSKSDQEVS SGQQQHKPKR SLSKEKNSTE  300
GSSSSRCSSS PSVQDSSSNS VVGGRKADD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4453850.0AM445385.2 Vitis vinifera contig VV78X268497.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277206.20.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT234e-88BH121_ARATH; Transcription factor bHLH121
TrEMBLD7U5A30.0D7U5A3_VITVI; Uncharacterized protein
STRINGVIT_03s0038g01790.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-82bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]