PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023600001
Common NameLOC100262194, VIT_11s0037g00150
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 500aa    MW: 53814.7 Da    PI: 6.5137
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023600001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.32e-25189245259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         DgynWrKYGqK+vk+ + +rsYY+Ct+++C +kk +e++++ ++v+ei+Y+++Hnh+
  GSVIVT01023600001 189 ADGYNWRKYGQKQVKSPKGSRSYYKCTYSDCYAKK-IECCDDSGQVIEIIYKSRHNHD 245
                        6********************************98.*********************7 PP
2WRKY97.68.1e-31362418359
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++v+itY+g H+h+
  GSVIVT01023600001 362 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAIDNTSAVIITYKGIHDHD 418
                        9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-22181247IPR003657WRKY domain
PROSITE profilePS5081117.993183247IPR003657WRKY domain
SuperFamilySSF1182902.09E-20186247IPR003657WRKY domain
SMARTSM007742.2E-24188246IPR003657WRKY domain
PfamPF031066.4E-18190245IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-31345420IPR003657WRKY domain
PROSITE profilePS5081131.582355420IPR003657WRKY domain
SuperFamilySSF1182903.79E-27356420IPR003657WRKY domain
SMARTSM007742.7E-35360419IPR003657WRKY domain
PfamPF031061.4E-23362417IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MAGNQSFEAP EAEKAEPNPE SDSGSDSDSA ESGSEDGEGL SDSEGVGAAE LGEPRESETL  60
AVASSITESG SQLLSGSALN STSQSLASVE FKEQAGVCHQ EVRTTVTAQT THVQTKKQLQ  120
SSGCPTSSVE LSPTSVTQSI QSAPSPTILE QRPSPFPKVN SECMPEGNQK NSSDLKTIST  180
VPSVKTPSAD GYNWRKYGQK QVKSPKGSRS YYKCTYSDCY AKKIECCDDS GQVIEIIYKS  240
RHNHDPPRKI NCMKEGKLSP VGPVTGNSTT ADPVRMLNDS DPSTSSKEPV QETPLIPERK  300
RPNSDASDEN PEIKVKEEHI DEPEPKRRSK KSSLGNSGSH FKPGKKPKFV VHAAGDVGIS  360
GDGYRWRKYG QKMVKGNPHP RNYYRCTSAG CPVRKHIETA IDNTSAVIIT YKGIHDHDMP  420
VPKKRHGPPS APLVAAAAPA SMNSLQFKKT EAFQNQISST QWSVDMEGEL AAEELDPGGE  480
KAMESARTLL SIGFEIKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-26348420274WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.92600.0bud| flower| fruit| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3951420.0FQ395142.1 Vitis vinifera clone SS0AFA17YI19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276194.10.0PREDICTED: probable WRKY transcription factor 32 isoform X2
SwissprotP595831e-131WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLD7U1A80.0D7U1A8_VITVI; Uncharacterized protein
STRINGVIT_11s0037g00150.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10318610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-123WRKY DNA-binding protein 32