PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 307aa MW: 35593 Da PI: 9.9018

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01023527001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.2	2.1e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l GSVIVT01023527001 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	34.9	3.6e-11	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l GSVIVT01023527001 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.008	2	57	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-18	5	56	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-15	6	55	IPR001005	SANT/Myb domain
Pfam	PF13921	9.0E-14	10	70	No hit	No description
CDD	cd00167	2.64E-11	10	53	No hit	No description
SuperFamily	SSF46689	1.47E-21	33	106	IPR009057	Homeodomain-like
CDD	cd11659	2.12E-30	55	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.5E-15	57	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.443	58	107	IPR017930	Myb domain
SMART	SM00717	1.7E-12	58	105	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009870	Biological Process	defense response signaling pathway, resistance gene-dependent
GO:0010204	Biological Process	defense response signaling pathway, resistance gene-independent
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LAKRKGIDYN AEIPFEKKPP PGFFDVTDEE RLVEQPKFPT TIEELEGKRR VDVEAQLRKQ 240 DVAKNKIAQR QDAPSAILQA NKMNDPETVR KRSKLMLPAP QISDHELEEI AKMEHRLVRE 300 KILKLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	1e-127	2	293	3	313	Cell division cycle 5-like protein
5xjc_L	1e-127	2	293	3	313	Cell division cycle 5-like protein
5yzg_L	1e-127	2	293	3	313	Cell division cycle 5-like protein
5z56_L	1e-127	2	293	3	313	Cell division cycle 5-like protein
5z57_L	1e-127	2	293	3	313	Cell division cycle 5-like protein
5z58_L	1e-127	2	293	3	313	Cell division cycle 5-like protein
6ff4_L	1e-127	2	293	3	313	Cell division cycle 5-like protein
6ff7_L	1e-127	2	293	3	313	Cell division cycle 5-like protein
6icz_L	1e-127	2	293	3	313	Cell division cycle 5-like protein
6id0_L	1e-127	2	293	3	313	Cell division cycle 5-like protein
6id1_L	1e-127	2	293	3	313	Cell division cycle 5-like protein
6qdv_O	1e-127	2	293	3	313	Cell division cycle 5-like protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	184	KRKAREKQLEEARRLAKRK
2	178	184	RRLAKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.2776	0.0	bud\| flower\| fruit\| inflorescence\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269\|PubMed:8917598}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00028	SELEX	Transfer from AT1G09770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM431263	0.0	AM431263.2 Vitis vinifera contig VV78X265007.12, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010660227.1	0.0	PREDICTED: cell division cycle 5-like protein
Refseq	XP_015875524.1	0.0	cell division cycle 5-like protein
Refseq	XP_015875562.1	0.0	cell division cycle 5-like protein
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A067DSG9	0.0	A0A067DSG9_CITSI; Uncharacterized protein
TrEMBL	A0A2C9VAY9	0.0	A0A2C9VAY9_MANES; Uncharacterized protein
STRING	evm.model.supercontig_306.1	0.0	(Carica papaya)
STRING	cassava4.1_000851m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3948	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	1e-176	cell division cycle 5

Link Out ? help Back to Top
Phytozome	GSVIVT01023527001

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]