PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01023527001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 35593 Da PI: 9.9018 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.2 | 2.1e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l GSVIVT01023527001 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 34.9 | 3.6e-11 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l GSVIVT01023527001 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 9.0E-14 | 10 | 70 | No hit | No description |
CDD | cd00167 | 2.64E-11 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 1.47E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 2.12E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-15 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LAKRKGIDYN AEIPFEKKPP PGFFDVTDEE RLVEQPKFPT TIEELEGKRR VDVEAQLRKQ 240 DVAKNKIAQR QDAPSAILQA NKMNDPETVR KRSKLMLPAP QISDHELEEI AKMEHRLVRE 300 KILKLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
5xjc_L | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
5yzg_L | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
5z56_L | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
5z57_L | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
5z58_L | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
6ff4_L | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
6ff7_L | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
6icz_L | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
6id0_L | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
6id1_L | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
6qdv_O | 1e-127 | 2 | 293 | 3 | 313 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 184 | KRKAREKQLEEARRLAKRK |
2 | 178 | 184 | RRLAKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.2776 | 0.0 | bud| flower| fruit| inflorescence| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM431263 | 0.0 | AM431263.2 Vitis vinifera contig VV78X265007.12, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010660227.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Refseq | XP_015875524.1 | 0.0 | cell division cycle 5-like protein | ||||
Refseq | XP_015875562.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A067DSG9 | 0.0 | A0A067DSG9_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2C9VAY9 | 0.0 | A0A2C9VAY9_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_306.1 | 0.0 | (Carica papaya) | ||||
STRING | cassava4.1_000851m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3948 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 1e-176 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01023527001 |
Publications ? help Back to Top | |||
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