PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01023283001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | TCP | ||||||||
Protein Properties | Length: 388aa MW: 42378.1 Da PI: 8.0579 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 133.4 | 2.1e-41 | 108 | 213 | 2 | 113 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s+ GSVIVT01023283001 108 PPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTISA----- 194 5789*****************************************************************999777777777773333..... PP TCP 93 saakskksqksaasalnlake 113 ++sk++++s + al+la++ GSVIVT01023283001 195 --PPSKSAPHSFHGALALAHH 213 ..2334444444444444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.1E-39 | 113 | 233 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.496 | 114 | 168 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MEIDEEVDLH RSRWWSLLLG GQVVEEDHPT QPHSWAPAPA NLASFEIWMP PPLLLLQTPL 60 LLSVVIAPPL LLLRLRRRSW LTPPSPSLPD PRLTGADRAA QLTIGTNPPA KRSTKDRHTK 120 VDGRGRRIRM PATCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIAATG TGTIPANFST 180 LNVSLRSSGS TISAPPSKSA PHSFHGALAL AHHPHYEEGF PHTAMLGFHQ QPHLLSADQI 240 GDALPGALEN TTTASEAASG NGNNKTTSLH MGKSPQEQQP GSTFWMLPPH MWALPTAAPT 300 TTGNTLQAPL HFMPRFNLAS NLDFQGGRAN PLQLGSMLMQ QHPSQHLGTR TSLKEQTVEM 360 KIQTAHNSSN IPFQSSFFWL VRFEDMG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM426749 | 0.0 | AM426749.2 Vitis vinifera contig VV78X010330.4, whole genome shotgun sequence. | |||
GenBank | FQ394003 | 0.0 | FQ394003.1 Vitis vinifera clone SS0AFA23YB21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010658023.1 | 1e-158 | PREDICTED: transcription factor TCP8 | ||||
Swissprot | Q9C518 | 5e-61 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | F6HK55 | 1e-157 | F6HK55_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0035g00690.t01 | 1e-158 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4591 | 10 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 5e-64 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01023283001 |
Publications ? help Back to Top | |||
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