PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023150001
Common NameLOC100247160, VIT_12s0035g01790
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 876aa    MW: 103614 Da    PI: 7.1189
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023150001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.5e-08359386126
                        --S---SGGGGTS..--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                        +k ++C  ++++   tC++G  C+F+H+
  GSVIVT01023150001 359 WKVAICGEYMKSRfkTCSHGTACNFIHC 386
                        899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.441197225IPR000571Zinc finger, CCCH-type
SMARTSM0035619198224IPR000571Zinc finger, CCCH-type
PRINTSPR018485.2E-32203222IPR009145U2 auxiliary factor small subunit
PRINTSPR018485.2E-32222242IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3308.5E-26228354IPR012677Nucleotide-binding alpha-beta plait domain
SMARTSM003613.2E-5278352IPR003954RNA recognition motif domain, eukaryote
SuperFamilySSF549282.99E-15288355IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501028.928293356IPR000504RNA recognition motif domain
PRINTSPR018485.2E-32313335IPR009145U2 auxiliary factor small subunit
PRINTSPR018485.2E-32340364IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.465358388IPR000571Zinc finger, CCCH-type
SMARTSM003560.016358387IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5359386IPR000571Zinc finger, CCCH-type
PRINTSPR018485.2E-32378390IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MENQGMSRKE KRKAAKKQKR KQTRREAAVR LREEEEAKLN DPEEQERMRL MEQEEAERCE  60
RERRKFEESE RMWLEAAAER KRRKEVEEEE RRKILEELEK KEVEKENELN EDDDWEYAEG  120
PAEIIWQGNE IIVKKKRVRI AKKDVDQHSR KEEDTERPTS NPLPPQSEAF SDHNASIISS  180
QQLFADVSEQ IPNFGTEQDK DHCPFHIKTG ACRFGQRCSR VHFYPDKSCT LLIKNMYNGP  240
GLAWEQDEGL EKFISRFIWW SSWFWPWLGW TCRRQNPLYT DEEVERCYEE FYEDVQTEFL  300
KFGEIVNFKV CRNGSFHLRG NVYVHYKSLD SAVLAYHSIN GLYYAGKQVT CEFVGVTRWK  360
VAICGEYMKS RFKTCSHGTA CNFIHCFRNP GGDYEWADWD KPPPRYWVKN MVALFGLTDE  420
SGYDKEVKQE SMGRRRSTSN AGTVDADRYH SRRSRSRESG YSHGEYARRQ FDENDAHKNV  480
YYQRHTSDGR KRIKMHEERY EEEAHFGDNR YSRSRIHNVE SDGDLEGDKS RKHGHTRKSL  540
KHQKEAMAVM DDLGDSNNSI HEPDSDGGWS DRDGDHDGHH DHTMKRLKNR SKMSEFSNDH  600
RNSKYRTDAT DSDGDSSHRN RQGDRYHSHR RKSSRHWDEV SETADDDEDK RKRTHDTDPT  660
GDWSDEVGER HQSKRRNCSR HWSDDHEETE KNVKDEFQGQ EFDTEKPDVP RVQKHSHSSR  720
KDGSNKEMIS RADFISEDKK SNGNHEASSS DQHGRRSKSY NPDSRYHSDE NIDKEGDWEP  780
EKTRKSRREK STSHKHHKYR DHEDYSKSKS RGGDRSIHRR HSTSLNNADS SEEYQDSENK  840
DKRHGGKHQS SSHRRHISPD IFEINSSFRK TEIKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A7e-251943859167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16283RRKFEESERMWLEAAAERKRRK
27984RKRRKE
3649654KRKRTH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.146610.0flower
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4760950.0AM476095.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X038396.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657918.10.0PREDICTED: zinc finger CCCH domain-containing protein 5
TrEMBLF6HK030.0F6HK03_VITVI; Uncharacterized protein
STRINGVIT_12s0035g01790.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP592666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-133C3H family protein