PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023108001
Common NameLOC104881026, VIT_12s0035g02120
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 444aa    MW: 49928.5 Da    PI: 4.6011
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023108001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.7e-1418991097
                       HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         +s+rl +p  f+ +++g+ +e  + +l+  sgr+W v++     ++ +++ +GW++F  +n L+eg f+vF++dg++ f   +k+f
  GSVIVT01023108001 18 EYSSDRLLIPTAFLGHFNGVVPE--KAILREFSGRVWLVEV--GLIGKDVYFLNGWQRFRTDNSLEEGVFLVFRYDGSHIF--DFKLF 99
                       567899********887777544..7***************..55555566667*********************997766..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-185104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-205104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.8159102IPR003340B3 DNA binding domain
CDDcd100172.87E-12999No hitNo description
SMARTSM010199.5E-1011102IPR003340B3 DNA binding domain
PfamPF023621.9E-111894IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009570Cellular Componentchloroplast stroma
GO:0009941Cellular Componentchloroplast envelope
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MSSPPRELPE FCNVYLPEYS SDRLLIPTAF LGHFNGVVPE KAILREFSGR VWLVEVGLIG  60
KDVYFLNGWQ RFRTDNSLEE GVFLVFRYDG SHIFDFKLFG RNQCEKIETD NDQLQAQMQE  120
TEPFQQLVTP SSITPWVCPQ PGKEVDQEVG KKSPFTLPRR KRKAAKLPVT TIYRPRTRQS  180
TKWFTRFNAD DTGIIDLCSL SKESETSDPT NQDFRSTNDF KCDQVSSHQV PISPGGILLA  240
DCNSPVSCGA PCTELTQGSE DNMIPEDFDN FVDSLDDMLA QPLPEALLSP SATDNYQASE  300
DEIAEARIKL SSLLAMDFHL LVSSKDLKEL ALLSSKLQKD PSLDADQLSK LKLIEEIPVT  360
GKVFLEAMQI KEEVNKFFAD LTSSMDKATS LRNEYNASKE DIAMLQVDIN SSLSTLEEID  420
DQIAKLQSRR AELSTALKIK RRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4336480.0AM433648.2 Vitis vinifera contig VV78X145212.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019078980.10.0PREDICTED: uncharacterized protein LOC104881026, partial
TrEMBLD7TGI70.0D7TGI7_VITVI; Uncharacterized protein
STRINGVIT_12s0035g02120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8585614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-19B3 family protein