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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01023108001 |
Common Name | LOC104881026, VIT_12s0035g02120 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
B3 |
Protein Properties |
Length: 444aa MW: 49928.5 Da PI: 4.6011 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01023108001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 42.8 | 9.7e-14 | 18 | 99 | 10 | 97 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
+s+rl +p f+ +++g+ +e + +l+ sgr+W v++ ++ +++ +GW++F +n L+eg f+vF++dg++ f +k+f
GSVIVT01023108001 18 EYSSDRLLIPTAFLGHFNGVVPE--KAILREFSGRVWLVEV--GLIGKDVYFLNGWQRFRTDNSLEEGVFLVFRYDGSHIF--DFKLF 99
567899********887777544..7***************..55555566667*********************997766..55555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 444 aa
Download sequence Send
to blast |
MSSPPRELPE FCNVYLPEYS SDRLLIPTAF LGHFNGVVPE KAILREFSGR VWLVEVGLIG 60 KDVYFLNGWQ RFRTDNSLEE GVFLVFRYDG SHIFDFKLFG RNQCEKIETD NDQLQAQMQE 120 TEPFQQLVTP SSITPWVCPQ PGKEVDQEVG KKSPFTLPRR KRKAAKLPVT TIYRPRTRQS 180 TKWFTRFNAD DTGIIDLCSL SKESETSDPT NQDFRSTNDF KCDQVSSHQV PISPGGILLA 240 DCNSPVSCGA PCTELTQGSE DNMIPEDFDN FVDSLDDMLA QPLPEALLSP SATDNYQASE 300 DEIAEARIKL SSLLAMDFHL LVSSKDLKEL ALLSSKLQKD PSLDADQLSK LKLIEEIPVT 360 GKVFLEAMQI KEEVNKFFAD LTSSMDKATS LRNEYNASKE DIAMLQVDIN SSLSTLEEID 420 DQIAKLQSRR AELSTALKIK RRK*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM433648 | 0.0 | AM433648.2 Vitis vinifera contig VV78X145212.5, whole genome shotgun sequence. |