PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01023089001 | ||||||||
Common Name | VIT_04s0069g01150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bZIP | ||||||||
Protein Properties | Length: 58aa MW: 7170.25 Da PI: 10.9313 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.4 | 2e-15 | 8 | 51 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kN e+A+ sR+RK+a++ eLe+kv Le+eN++L+k+ GSVIVT01023089001 8 RRQKRMIKNWESATHSRARKQAYTNELENKVSRLEEENERLRKR 51 69****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.5E-5 | 4 | 55 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.392 | 6 | 51 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-13 | 8 | 51 | No hit | No description |
Pfam | PF00170 | 2.9E-13 | 8 | 51 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.88E-11 | 8 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
MIEKTIERRQ KRMIKNWESA THSRARKQAY TNELENKVSR LEEENERLRK RKVYIFF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.24690 | 4e-75 | cell culture| flower| fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM426555 | 2e-43 | AM426555.2 Vitis vinifera contig VV78X160260.4, whole genome shotgun sequence. | |||
GenBank | AM435475 | 2e-43 | AM435475.1 Vitis vinifera contig VV78X054728.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018842402.1 | 4e-23 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
Swissprot | Q9C5Q2 | 7e-19 | AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3 | ||||
TrEMBL | D7T0G0 | 2e-30 | D7T0G0_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0069g01150.t01 | 3e-31 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10063 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 9e-14 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01023089001 |
Publications ? help Back to Top | |||
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