PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 225aa MW: 25737.5 Da PI: 8.4869

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01022661001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	7.7e-16	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll ++v+ +G + W++++ + g+ R++k+c++rw++yl GSVIVT01022661001 8 KGKWTREEDILLRKCVENYGEEKWHLVPLRAGLSRCRKSCRLRWFNYL 55 79********************************************97 PP
2	Myb_DNA-binding	43.6	7e-14	61	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ +E +l ++++k+lG++ W++Ia +++ gRt++++k++w+ ++ GSVIVT01022661001 61 RGKFASDEVDLMIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWHHHR 106 799999**************.*****.*********9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.866	1	59	IPR017930	Myb domain
SuperFamily	SSF46689	7.86E-27	5	102	IPR009057	Homeodomain-like
SMART	SM00717	9.4E-13	7	57	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	8	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-20	9	62	IPR009057	Homeodomain-like
CDD	cd00167	1.48E-9	10	55	No hit	No description
SMART	SM00717	4.7E-10	60	108	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.465	60	110	IPR017930	Myb domain
Pfam	PF00249	1.3E-11	61	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-20	63	110	IPR009057	Homeodomain-like
CDD	cd00167	1.34E-7	67	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MESLGVTKGK WTREEDILLR KCVENYGEEK WHLVPLRAGL SRCRKSCRLR WFNYLKPNIK 60 RGKFASDEVD LMIRLHKLLG NRWSLIAGRL PGRTANDVKN YWHHHRFKKM VPIQEKGKDK 120 AQTNSENTLI KPKPCKLFLG FTFKTTAVDA SETQGSTCSE LQPTLVQPNQ DILWWESLFA 180 DHTIEDQELI ASLLADETAS AVDTNGGGNF DFPFEMGLID EVMR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-21	6	103	5	101	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM453835	0.0	AM453835.2 Vitis vinifera contig VV78X046090.12, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002265163.1	1e-168	PREDICTED: transcription factor MYB113
Swissprot	Q9FNV9	1e-56	MY113_ARATH; Transcription factor MYB113
TrEMBL	D7U3S9	1e-167	D7U3S9_VITVI; Uncharacterized protein
STRING	VIT_02s0033g00430.t01	1e-168	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	6e-59	myb domain protein 113

Link Out ? help Back to Top
Phytozome	GSVIVT01022661001
Entrez Gene	100249851

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]