PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 231aa MW: 26432.3 Da PI: 10.2287

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01022656001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.4e-17	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++++G g W++++ + g++R+lk+c++rw++yl GSVIVT01022656001 8 KGAWTQEEDVLLRKCIEKYGEGKWHLVPLRAGLNRCLKSCRLRWLNYL 55 79********************************************97 PP
2	Myb_DNA-binding	39.5	1.3e-12	61	103	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg + +E +l ++++++lG++ W++Ia +++ gRt++++k++w+ GSVIVT01022656001 61 RGEFALDEVDLMIRLHNLLGNR-WSLIAGRLP-GRTANDVKNYWH 103 6777889999**********.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.888	1	59	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-21	4	57	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.01E-27	5	102	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-14	7	57	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-15	8	55	IPR001005	SANT/Myb domain
CDD	cd00167	6.66E-10	10	55	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-19	58	110	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.139	60	110	IPR017930	Myb domain
SMART	SM00717	6.2E-10	60	108	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-11	61	103	IPR001005	SANT/Myb domain
CDD	cd00167	1.13E-6	67	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MKSLGVRKGA WTQEEDVLLR KCIEKYGEGK WHLVPLRAGL NRCLKSCRLR WLNYLKPDIK 60 RGEFALDEVD LMIRLHNLLG NRWSLIAGRL PGRTANDVKN YWHGHHLKKK VQFQEEGRKK 120 PQTHSKTKAI KPHPHKFSKA LPRFELKTTA VDTFDTQVST SSKPSSTSPQ PNDDIIWWES 180 LLAEHAQMDQ ETDFSASGEM LIASLWTEET ATQKKGTHSK TKLIHVTTTE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-20	8	111	7	108	B-MYB
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.3323	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB097924	0.0	AB097924.1 Vitis vinifera VvmybA2 mRNA for myb-relared transcription factor VvMYBA2, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002265048.1	1e-155	PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB90
Swissprot	Q9FNV9	3e-61	MY113_ARATH; Transcription factor MYB113
TrEMBL	Q6L9M8	1e-155	Q6L9M8_VITVI; Myb-relared transcription factor VvMYBA2
STRING	VIT_02s0033g00390.t01	1e-156	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	6e-62	myb domain protein 113

Link Out ? help Back to Top
Phytozome	GSVIVT01022656001

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]