PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01022586001

Common Name

LOC100267536, VIT_08s0032g01110

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

YABBY

Protein Properties

Length: 185aa MW: 20419.2 Da PI: 8.4986

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01022586001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	201.4	3.5e-62	2	156	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 +++ +se+vCyv+CnfCntilavsvP ts+f+ vt+rCGhC++llsvn+ q+++ ++ ++e+ ++ ++ s+s GSVIVT01022586001 2 SLDIASERVCYVHCNFCNTILAVSVPCTSVFNAVTIRCGHCANLLSVNMGALLQTVPLHDL-------------QKENLLFQASSKECGSSS 80 56789****************************************99999988887763.............344444555555556666 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++ ++ ++d+e pr+ p ek+qrvPsaynrfikeeiqrika+nPdish+eafs+aaknWahfP+ihfgl GSVIVT01022586001 81 KFHKVAAMD-SSDNEQPRMLPKGAAQEKKQRVPSAYNRFIKEEIQRIKANNPDISHKEAFSTAAKNWAHFPHIHFGL 156 666666654.456677899999999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-70	6	156	IPR006780	YABBY protein
Gene3D	G3DSA:1.10.30.10	2.1E-5	105	150	IPR009071	High mobility group box domain
SuperFamily	SSF47095	2.75E-7	105	149	IPR009071	High mobility group box domain
CDD	cd01390	9.78E-6	110	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSLDIASERV CYVHCNFCNT ILAVSVPCTS VFNAVTIRCG HCANLLSVNM GALLQTVPLH 60 DLQKENLLFQ ASSKECGSSS KFHKVAAMDS SDNEQPRMLP KGAAQEKKQR VPSAYNRFIK 120 EEIQRIKANN PDISHKEAFS TAAKNWAHFP HIHFGLTLNN SKSDKANFDE AFSGEGPRKT 180 QGFY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.13042	0.0	fruit\| inflorescence\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC139090	0.0	KC139090.1 Vitis pseudoreticulata transcription factor YABBY2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002263154.2	1e-137	PREDICTED: axial regulator YABBY 5 isoform X1
Refseq	XP_010653253.1	1e-137	PREDICTED: axial regulator YABBY 5 isoform X1
Swissprot	Q9XFB0	2e-67	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	D7U8S1	1e-136	D7U8S1_VITVI; Uncharacterized protein
STRING	VIT_08s0032g01110.t01	1e-137	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	9e-70	YABBY family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01022586001
Entrez Gene	100267536

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]