PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01022264001 | ||||||||
Common Name | VITISV_026075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C3H | ||||||||
Protein Properties | Length: 127aa MW: 13851.6 Da PI: 8.6536 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.1 | 1.1e-11 | 9 | 29 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C+ fa tGtC+yG+rC+F+H GSVIVT01022264001 9 VCKQFAVTGTCPYGPRCRFSH 29 6******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.774 | 4 | 32 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-6 | 4 | 31 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-8 | 4 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-8 | 9 | 32 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-9 | 9 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MRTRPEGNVC KQFAVTGTCP YGPRCRFSHQ IQSLLSTTQQ TPSPSRPQHT AATTPTIKTA 60 TPTKTTADWS PMDDGIEVVL PGSSAEKPAS RDEVNTYINS FLYGPTTPRR RLPVFEEICP 120 SREATP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM443893 | 0.0 | AM443893.2 Vitis vinifera contig VV78X144361.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010652879.1 | 2e-88 | PREDICTED: mRNA decay activator protein ZFP36 | ||||
Refseq | XP_019076491.1 | 2e-88 | PREDICTED: mRNA decay activator protein ZFP36 | ||||
Refseq | XP_019076492.1 | 2e-88 | PREDICTED: mRNA decay activator protein ZFP36 | ||||
Refseq | XP_019076493.1 | 2e-88 | PREDICTED: mRNA decay activator protein ZFP36 | ||||
TrEMBL | A0A438F5H2 | 4e-87 | A0A438F5H2_VITVI; mRNA decay activator protein ZFP36L2-A | ||||
TrEMBL | D7SW89 | 4e-87 | D7SW89_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0031g01870.t01 | 7e-88 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP12121 | 4 | 4 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01022264001 |