PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022214001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YB
Protein Properties Length: 292aa    MW: 32261.6 Da    PI: 9.2653
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022214001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.18e-56105200297
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++ lGfe+yv plkvyl+kyre+
  GSVIVT01022214001 105 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTMLGFENYVGPLKVYLSKYRET 196
                        89****************************************************************************************** PP

              NF-YB  94 egek 97 
                        egek
  GSVIVT01022214001 197 EGEK 200
                        **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-53100213IPR009072Histone-fold
SuperFamilySSF471135.43E-41107232IPR009072Histone-fold
PfamPF008083.2E-27110174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.6E-19138156No hitNo description
PROSITE patternPS006850141157IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.6E-19157175No hitNo description
PRINTSPR006154.6E-19176194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MIRFTYSFSF LASRFHTKNL SLASVCFFPF VSIPNRLSTL YFPSFYPLLP LSLSLTPYKL  60
STQIPLSPTI TLLFVSTSLC AISMTGKRAQ NSPVGSPSSD TSSSKEQDRF LPIANVSRIM  120
KKSLPANAKI SKEAKETVQE CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMTMLGFE  180
NYVGPLKVYL SKYRETEGEK NNVVARHEDQ SAVFNSNQMN KANKSIPIDP DFQGFNGGFY  240
SLGPQMNGDE AAAAMGYGDS LVTGAFNRSR IRENDGNGNR IMASYSSPQW S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-45105195292Transcription factor HapC (Eurofung)
4g92_B1e-45105195292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4351070.0AM435107.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X276468.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276300.11e-154PREDICTED: nuclear transcription factor Y subunit B-1
TrEMBLF6H4A11e-153F6H4A1_VITVI; Uncharacterized protein
STRINGVIT_07s0031g01460.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-63nuclear factor Y, subunit B3