PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022200001
Common NameVIT_07s0031g01320
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 350aa    MW: 39125.4 Da    PI: 6.3229
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022200001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.91.6e-116499438
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHH CS
             bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeL 38
                       +k++rr+++NReAAr+sR+RKka+++eLe  +vk +
  GSVIVT01022200001 64 DKVQRRLAQNREAARKSRLRKKAYVQELESsRVKLM 99
                       79**************************97244433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-860108No hitNo description
SMARTSM003381.6E-761121IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.09463107IPR004827Basic-leucine zipper domain
PfamPF001701.8E-864100IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.45E-765107No hitNo description
CDDcd147082.77E-2165117No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
PfamPF141444.6E-32151226IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGIYEPLHQI STWGESFKTN GCPNTSASTI AELEAKLDNQ SEDTSHGTPG PSDKYDQEAT  60
KPVDKVQRRL AQNREAARKS RLRKKAYVQE LESSRVKLMQ LEQELERARQ QGLYIGGGLD  120
AGHLGFSGAV NSGIAAFEME YGHWVEEQSS QICELRTALH AHISDVELRI LVETAMNHYF  180
NLFRMKANAA KADVFYMMSG MWKTSAERFF LWIGGFRPSE LLKVLVPQLD PLTDQQILDV  240
CNLRQSCQQA EDALTQGMEK LQQILAEAVA AGQLGEGSYI PQLATALEKL EAVVSFVNQA  300
DHLRQETLQQ MVRILTVRQA ARGLLALGEY FQRLRALSSL WATRPREPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.3360.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3951930.0FQ395193.1 Vitis vinifera clone SS0AFA17YE03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652849.10.0PREDICTED: transcription factor TGA1 isoform X3
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLD7SW330.0D7SW33_VITVI; Uncharacterized protein
STRINGVIT_07s0031g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]