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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01022143001 |
Common Name | VIT_07s0031g00780 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
B3 |
Protein Properties |
Length: 509aa MW: 57201.4 Da PI: 6.9386 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01022143001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 58.2 | 1.5e-18 | 140 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
f+kvl++s+v++ ++ lp +f++ h + ++++ +tledesg ++k+i +k++ l++GW++F +++L egD++vF+l++ ++f
GSVIVT01022143001 140 FVKVLVRSHVSSCFWMGLPGPFCDMHL-P-KKDVIITLEDESGAACQIKYIADKTG----LSAGWRRFSMDHKLLEGDVLVFHLVEPTSF-- 223
89*********************9995.3.37899***************888888....***********************9987777.. PP
EEEEE-S CS
B3 93 vvkvfrk 99
+v ++r+
GSVIVT01022143001 224 KVYIIRA 230
8988886 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 509 aa
Download sequence Send
to blast |
MGVDQNVVKQ EVEDEVFRMA SSRESRRSRE EDVTLAQLSQ TVRTFAPSTP QSLTKIKLKS 60 STRTKQKKCV EKKEKGFGIK RRRSTFKLKH EASDHSPKSA SRKRNKAAVD GSCTPLKAKT 120 SALIRAEEVQ SNLGPEFPSF VKVLVRSHVS SCFWMGLPGP FCDMHLPKKD VIITLEDESG 180 AACQIKYIAD KTGLSAGWRR FSMDHKLLEG DVLVFHLVEP TSFKVYIIRA NDLTEVDGAL 240 GLLELDTHTK NDAGKLVAVS VIADLDTVAC KSSKRKHSKS LPLVVFQKKN RKTGSIPNLM 300 QREQSENDSE GNGSEVLEGS KFFEPAVQFK DISFDNFNIL VDGLLIDSEL PEDTRAKYYE 360 LCCSQNAFLH EKIVEGLNCR LIAEIISQTV QIADALRACK LTTSRVEFTN WERTLKAFEV 420 LGMNVGFLQA RLDHLVSLAF DSEGAMYSRQ YMEVTIERAH AEDEMRDLED KLMELKAASE 480 RMDADIETLK EAVENHVIRF QEEIVAPW*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM452180 | 0.0 | AM452180.2 Vitis vinifera contig VV78X221870.3, whole genome shotgun sequence. |