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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01021832001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 523aa MW: 59288.1 Da PI: 6.5597 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01021832001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 50.4 | 6e-16 | 119 | 189 | 2 | 85 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
W+++evlaL+++r++me+++ + We+vs+k++e+gf+rs+++Ckek+e+ ++++ + + +k+ +++f++l
GSVIVT01021832001 119 WSNDEVLALLRIRSSMENWYPDF-----TWEHVSRKLAEQGFKRSAEKCKEKFEQESRYFNTTMNYSKN--------YRFFSEL 189
********************998.....9*******************************987666554........4555555 PP
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2 | trihelix | 93.7 | 1.8e-29 | 374 | 457 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+++evlaLi++r +++ + ++g +k+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql
GSVIVT01021832001 374 RWPRDEVLALINLRCSLNVEDKEG-AKGPLWERISQGMLALGYKRSAKRCKEKWENINKYFRKTKDVSKKR-SLDSRTCPYFHQLS 457
8*****************999998.9********************************************8.9999********95 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding |
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
Protein Sequence Length: 523 aa
Download sequence Send
to blast |
MFDGVPSDQF HQFVAAAAAA AASSTTSQLQ PPPPSLSFPL HVSSSTFPSF DLYPSGSGGG 60 GGAAAAAHQP LQVPHLLHPL HHHSSAPHKD DQDKEENALV SINLEPQKER SMLDLINPWS 120 NDEVLALLRI RSSMENWYPD FTWEHVSRKL AEQGFKRSAE KCKEKFEQES RYFNTTMNYS 180 KNYRFFSELE ELYHGESPHQ QDVAEKNQKV VEKPNEEDRS LEEDSRNETV VGNPCLETEK 240 VEDKSKGKKR KRHTQNKSFE MFKGFCEAVV SKMMAQQEEM HNKLLEDMVK RDEEKTAREE 300 AWKKQEMDRI NKEIEIREHE QAIAGDRQAT IIGFLKKFTS SNPLEAPTSS RKRPSAPTSF 360 PSITDHRDQE LGKRWPRDEV LALINLRCSL NVEDKEGAKG PLWERISQGM LALGYKRSAK 420 RCKEKWENIN KYFRKTKDVS KKRSLDSRTC PYFHQLSTLY SQGTLVVPSS EAPAPENCLN 480 SSENHSSLPE NQVGGSSSNT NMHAADEGEE NAAQLPAYDF KF*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM466321 | 0.0 | AM466321.1 Vitis vinifera contig VV78X023223.6, whole genome shotgun sequence. |