PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021790001
Common NameLOC100255566, VIT_14s0030g02200
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 384aa    MW: 40969.6 Da    PI: 6.191
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021790001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.68.3e-16219275359
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                        + kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L  eN++L k+l  +++++ + 
  GSVIVT01021790001 219 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLENSSLLKRLTDISQKYNEA 275
                        689*****************************************9999999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.6E-19217281IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.634219274IPR004827Basic-leucine zipper domain
PfamPF001703.1E-13220273IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-12221273No hitNo description
SuperFamilySSF579591.48E-11221271No hitNo description
PROSITE patternPS000360224239IPR004827Basic-leucine zipper domain
PfamPF124984.5E-22288338IPR020983Basic leucine-zipper, C-terminal
PfamPF124981.8E-8341373IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDRVFSVDEI PEQFWASPPS SSKEPSQMNR SASEWAFQRF LQESSSPPSS SSVSASGPSA  60
ENDVVELKVP IDDPKPTPAP PAPPAPATSL DPPPNVPIDS EEYQAFLKSR LNLACAAVAL  120
SRASFVKPQD SAALADTGSQ ASKTSQLRSQ APCKGSGYDL SGAPDKEAGG PLGIPSLPAM  180
QKKAGAQLRP TTSESSREHS DDDEVEGETE TIENMDPADA KRVRRMLSNR ESARRSRRRK  240
QAHLTELETQ VAQLRLENSS LLKRLTDISQ KYNEAAVDNR VLKADVETLR AKVKMAEETV  300
KRVTGLNPLF QTMSEISMAG MHSFDGSPSD TSADAAVPNP AAAGAAGNKM GRTASLQRVA  360
SLEHLQKRIR GAVNGPQGSG NQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233240RRSRRRKQ
2235240SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.29470.0flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3786460.0FQ378646.1 Vitis vinifera clone SS0AEB12YP01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279520.10.0PREDICTED: light-inducible protein CPRF2
SwissprotQ990901e-138CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLF6HTR10.0F6HTR1_VITVI; Uncharacterized protein
STRINGVIT_14s0030g02200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.25e-74bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]