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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01021627001 | ||||||||
Common Name | LOC100854662, VIT_10s0003g04710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | BES1 | ||||||||
Protein Properties | Length: 182aa MW: 18980.2 Da PI: 9.4257 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 110.5 | 2.8e-34 | 25 | 125 | 2 | 96 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssas..... 87 ++ + ++ ++E++k RER+RR i++ i+ GLR++G+y+l raD+neVl+ L+ eAGw+v++DGttyr++ p a+ ++ a GSVIVT01021627001 25 SGEKVRSVSDKEKTKMRERQRRSITTNIFHGLRKHGGYPLSPRADINEVLRHLASEAGWIVDPDGTTYRHSPTPSsGFASCPVCGAGkrsta 116 678899999************************************************************99999873333333222200000 PP DUF822 88 aspesslqs 96 +p+ss+ + GSVIVT01021627001 117 STPTSSVVL 125 333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.9E-32 | 26 | 137 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MKDATAAAAM TSSGRGGGGG SGSGSGEKVR SVSDKEKTKM RERQRRSITT NIFHGLRKHG 60 GYPLSPRADI NEVLRHLASE AGWIVDPDGT TYRHSPTPSS GFASCPVCGA GKRSTASTPT 120 SSVVLGGECS TTTSPRRFQV GDSVLSPYLA GCGGSGVGDV VTSERDIPLA LYMYEKQYYI 180 I* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM484589 | 1e-155 | AM484589.2 Vitis vinifera contig VV78X276804.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003632998.2 | 1e-123 | PREDICTED: protein BZR1 homolog 3 | ||||
TrEMBL | F6HLX3 | 1e-122 | F6HLX3_VITVI; Uncharacterized protein | ||||
STRING | VIT_10s0003g04710.t01 | 1e-123 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10087 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 8e-21 | beta-amylase 7 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01021627001 |
Entrez Gene | 100854662 |