PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021167001
Common NameVIT_10s0003g00870
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TCP
Protein Properties Length: 383aa    MW: 42398.4 Da    PI: 6.9057
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021167001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.33.9e-3666152385
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasns 85 
                        gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l++++++ + ++    +a++++++ ++ 
  GSVIVT01021167001  66 GKKDRHSKVCTSKGPRDRRVRLSANTAIQFYDVQDRLGYDRPSKAVDWLMEKAKTAIDALAELPTQCPLSTsvvaSAQQREQNLNHL 152
                        89*************************************************************777773331223222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3266151IPR005333Transcription factor, TCP
PROSITE profilePS5136932.70867125IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MLHEKTKDIW KSKRSYLMSS SASLVSEQLM IEGTRISLEH ASSELRLKKG AERVQVRRGH  60
IARSIGKKDR HSKVCTSKGP RDRRVRLSAN TAIQFYDVQD RLGYDRPSKA VDWLMEKAKT  120
AIDALAELPT QCPLSTSVVA SAQQREQNLN HLQHPHLRVE QLETILDLNQ QHLNENPIYS  180
SGFFHIPVST AFSAVHFQNS PAYPNLGAIS HTQYPYLSIQ SFQDPTPGRH HSTTISSADQ  240
AIYSASSPLV FDAASTHWPH SDPPEMSQPQ KMIDWNSDTG NGIQGLVFDS LPLPLQEPVL  300
SQNQLFSERE PLQSTDSALI SDWMNPPIST ANVQHITMEA NQSSGFALAS NGISRIGISA  360
HIQGEDMEQS TVCNSQSSAT HC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1872125154Putative transcription factor PCF6
5zkt_B1e-1872125154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4532270.0AM453227.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X136463.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655491.10.0PREDICTED: transcription factor TCP4
TrEMBLD7TJI20.0D7TJI2_VITVI; Uncharacterized protein
STRINGVIT_10s0003g00870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.16e-53TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3