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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01021137001 | ||||||||
Common Name | LOC100243518, VIT_10s0003g00500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | VOZ | ||||||||
Protein Properties | Length: 485aa MW: 53537.1 Da PI: 5.6617 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 441.5 | 1e-135 | 209 | 424 | 2 | 217 |
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppsaflgpkcalwdc+rpaqg++w+q+ycssfhatlal eg+pg+tpvlrp+gi+lkdgllfaalsakvqgk+vgipecegaatakspwna+ GSVIVT01021137001 209 PPSAFLGPKCALWDCPRPAQGMDWCQNYCSSFHATLALSEGPPGMTPVLRPGGIGLKDGLLFAALSAKVQGKDVGIPECEGAATAKSPWNAP 300 7******************************************************************************************* PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrl 185 elfdls+legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+e+gglkrsyymdpqp+++fewhlyeyei+++da+alyrl GSVIVT01021137001 301 ELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEYGGLKRSYYMDPQPLNHFEWHLYEYEISKCDACALYRL 392 ******************************************************************************************** PP VOZ 186 elklvdekksakgkvskdsladlqkklgrlta 217 elklvd+kks+k+k ++ds+adlqk++grlta GSVIVT01021137001 393 ELKLVDGKKSSKAKATTDSVADLQKQMGRLTA 424 ******************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MGKGSKSNCK SASHKMFKDK AKNRVDDLQG MFTDLQSARK ESRSVDVAVL EEQLHQMLRE 60 WKAELNEPSP ASSLQGGSLG SFSSDICRLL QLCEEEDDAT SALADGAVPK PEPDAQGHQI 120 GASVLFQERY NKGPQEHGFQ LVDQCKISPS GAHNMGVHNL EGATQLDYRQ FDLQQDFEQN 180 FFAGYDGTGL CGEDAMPHIS SFLPSICLPP SAFLGPKCAL WDCPRPAQGM DWCQNYCSSF 240 HATLALSEGP PGMTPVLRPG GIGLKDGLLF AALSAKVQGK DVGIPECEGA ATAKSPWNAP 300 ELFDLSVLEG ETIREWLFFD KPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMNEYGGLKR 360 SYYMDPQPLN HFEWHLYEYE ISKCDACALY RLELKLVDGK KSSKAKATTD SVADLQKQMG 420 RLTAEFPLDN KRSVKGRTKI NMKDGVGDVY STPNRVGPPN QQGDYGVGGP YDYLVENLGD 480 YYLT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.7055 | 0.0 | flower| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ393789 | 0.0 | FQ393789.1 Vitis vinifera clone SS0AFA24YC24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002273268.1 | 0.0 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | F6HM51 | 0.0 | F6HM51_VITVI; Uncharacterized protein | ||||
STRING | VIT_10s0003g00500.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01021137001 |
Entrez Gene | 100243518 |
Publications ? help Back to Top | |||
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