PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01021120001

Common Name

VIT_10s0003g00350

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 312aa MW: 35466.8 Da PI: 6.8317

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01021120001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.8	1.3e-33	60	200	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+Ptd+e++ e+L++kv +++++++ +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ GSVIVT01021120001 60 LPAGVKFDPTDQEIL-EHLEAKVLSDTHKTHPlidefipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHtnedg 149 799*********9.99*99995553333333222333336******.555555677**************74444665 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l GSVIVT01021120001 150 gETRWHKTGKTRPVFV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 200 5778********.9*********66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-39	54	219	IPR003441	NAC domain
PROSITE profile	PS51005	33.784	60	219	IPR003441	NAC domain
Pfam	PF02365	1.6E-15	61	200	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MTWCNDSDDE RAIQIISTSC EDKSVIDAKA DDILPTLTCP SCGHQIEFQD QAGIHDLPGL 60 PAGVKFDPTD QEILEHLEAK VLSDTHKTHP LIDEFIPTLE GENGICYTHP EKLPGVSKDG 120 LIRHFFHRPS KAYTTGTRKR RKVHTNEDGG ETRWHKTGKT RPVFVGGAVK GFKKILVLYT 180 NYGRQRKPEK TNWVMHQYHL GNNEEEKDGE LVVSKVFYQT QPRQCGLSIK DSLDNKSNSR 240 SAHDGPIIKS AALVEYYHPS FISYDQVSHN RESPPQLIPN LVDFSWFGVE LYTYRNHPKT 300 DFRIWDVEKV P*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.2656	0.0	bud\| fruit\| inflorescence\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269\|PubMed:18952777}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM478345	0.0	AM478345.2 Vitis vinifera contig VV78X129887.25, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002278661.1	0.0	PREDICTED: NAC domain-containing protein 73 isoform X2
Swissprot	O49459	1e-122	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	F6HM41	0.0	F6HM41_VITVI; Uncharacterized protein
STRING	VIT_10s0003g00350.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP525	15	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-125	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	GSVIVT01021120001

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]