PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01020805001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ARF | ||||||||
Protein Properties | Length: 837aa MW: 92418.8 Da PI: 6.9301 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.5 | 1.5e-24 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F GSVIVT01020805001 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFI-- 215 99*****************************96555555..8************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ GSVIVT01020805001 216 WNEKNQLLLGIRRA 229 8899999****997 PP | |||||||
2 | Auxin_resp | 121.4 | 6.9e-40 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k GSVIVT01020805001 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-48 | 114 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-42 | 119 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.61E-22 | 127 | 228 | No hit | No description |
PROSITE profile | PS50863 | 13.056 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-25 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-22 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.6E-35 | 254 | 337 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 4.05E-7 | 671 | 754 | No hit | No description |
Pfam | PF02309 | 2.5E-5 | 675 | 762 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.245 | 680 | 764 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 837 aa Download sequence Send to blast |
MRLSSSGFAH QTEEGEKKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE 60 VDAHIPNYPS LAPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEV CLLPAELGSP 120 SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHGNEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNEKN QLLLGIRRAN RPQTIMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYAKAVYH TRVSVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSPF PLRLKRPWPS ALPSFHAHKD GDMSINSPLM WLRGDIGDQG IQSLNFQGYG 420 LTPWMQPRLD ASMLGLQSNM QQAIAAASLQ ELRALDPSKH PAQSLLQFQQ PQNVSNSPAS 480 VFRGQIFCNN SCRLSDQQHI PKVISALSQL SSPTQSLPPS LQTIPSPIQQ QIFPDSVGNP 540 ITTSDVSTMQ SLLGSFSQDG TSHLLNLHGS NPVISSSAFF PKQVAVEPPL PSGTTQCVLP 600 QVEELATPPS NASELSTLLP PFPGRDENDS VSMPFSTPNF ANAPGTDFPL NSDMTTSSCI 660 DESGFLQSSE NLEQVNPPTR TFVKVHKLGS FGRSLDITKF SSYDELRGEL GRMFGLEGRL 720 EDPLRSGWQL VFVDRENDVL LLGDDPWQEF VNNVWYIKIL SPLEVQQMGK EGINVPNPIP 780 SHRISNSGNS WLGQVARVAK VEGGQMIFRF QAVPTLCDLV AAKSFHLSIR NPTCSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-161 | 16 | 358 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. Expressed in the mesocarp of the fruit and the carpel septum during fruit growth. {ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446840.1 | 0.0 | auxin response factor 6 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | V4U7I5 | 0.0 | V4U7I5_9ROSI; Auxin response factor | ||||
STRING | XP_006446840.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP856 | 14 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01020805001 |