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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01020666001 | ||||||||
Common Name | VIT_12s0028g02520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | TCP | ||||||||
Protein Properties | Length: 308aa MW: 33699.8 Da PI: 6.9128 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.8 | 2.3e-35 | 21 | 109 | 2 | 85 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssase 72 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ GSVIVT01020666001 21 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwhpialdpnasagtsdigmA------ 106 79**************************************************************7777776553322211111110...... PP TCP 73 ceaesssssasns 85 ++s GSVIVT01020666001 107 ----------QQS 109 ..........111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.9E-31 | 21 | 86 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.754 | 23 | 81 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MKSAGGGEIV QVQGGHIVRS TGRKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY 60 DRPSKAVDWL IKKAKSSIDK LAELPPWHPI ALDPNASAGT SDIGMAQQSQ ESNYVFPPLG 120 GGGGVGGENP SNDSAFIAPP LDSDSIADTM KSFFPTSSGT SSINYQNYPP DSNHHNEDLC 180 LSLHSFQDPD AESNHKNLFA SAAQVGYETN FQRMVSWGGG GGDSESRVLL LLFVLGMSFL 240 LLLGQCINLH SLMAGLCQME SQVFEFQHEF RVRRSIAWSQ IGHPLPPPTL ITEYTFSSNR 300 IFSRLSW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-23 | 28 | 81 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-23 | 28 | 81 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.9504 | 0.0 | fruit| inflorescence| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM478029 | 0.0 | AM478029.1 Vitis vinifera contig VV78X148456.10, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657020.1 | 1e-166 | PREDICTED: transcription factor TCP4 | ||||
Refseq | XP_010657021.1 | 1e-166 | PREDICTED: transcription factor TCP4 | ||||
Refseq | XP_010657023.1 | 1e-166 | PREDICTED: transcription factor TCP4 | ||||
Refseq | XP_010657024.1 | 1e-166 | PREDICTED: transcription factor TCP4 | ||||
Refseq | XP_019079378.1 | 1e-166 | PREDICTED: transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 5e-62 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | E0CTN3 | 0.0 | E0CTN3_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0028g02520.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-61 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01020666001 |