PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020394001
Common NameLOC100249286, VIT_19s0027g00840
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 285aa    MW: 32932 Da    PI: 7.53
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020394001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.41.7e-50171462128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         pGfrFhPtdeelv++yL++k+e+k +++ e+ik++diyk+ePwdL k++++ ++kewyfF+kr +ky+++ r+nr+t+sg+Wkatg dk++
  GSVIVT01020394001  17 LPGFRFHPTDEELVSFYLQRKIEKKLISI-EFIKQIDIYKYEPWDLAKNINTlTDKEWYFFCKRGRKYRNSIRPNRVTRSGFWKATGIDKPI 107
                        69***************************.99**************9766655889************************************ PP

                NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+   ++  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  GSVIVT01020394001 108 YSNngeGHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 146
                        **95544445***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5214176IPR003441NAC domain
PROSITE profilePS5100552.86916176IPR003441NAC domain
PfamPF023655.4E-2618146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025242anatomyinfructescence axis
PO:0007017developmental stagesporophyte senescent stage
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MIKSSMDATK DDDQVVLPGF RFHPTDEELV SFYLQRKIEK KLISIEFIKQ IDIYKYEPWD  60
LAKNINTLTD KEWYFFCKRG RKYRNSIRPN RVTRSGFWKA TGIDKPIYSN NGEGHDCIGL  120
KKSLVYYRGS AGKGTKTDWM MHEFRLPANQ KNTNLPNAKA ADQEAEIWTL CRIFKRDVSY  180
RKYTPDWRES SARHNPVNAR TKTCDADSEN LEYYNISFGA SAALDDEKKP VVGHSMDGRI  240
QLHVGSEPES CSTVLSEEAR EFFTNGNWDE IVSAMDFAFD PYHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-451818219171NO APICAL MERISTEM PROTEIN
1ut4_B8e-451818219171NO APICAL MERISTEM PROTEIN
1ut7_A8e-451818219171NO APICAL MERISTEM PROTEIN
1ut7_B8e-451818219171NO APICAL MERISTEM PROTEIN
3swm_A8e-451818222174NAC domain-containing protein 19
3swm_B8e-451818222174NAC domain-containing protein 19
3swm_C8e-451818222174NAC domain-containing protein 19
3swm_D8e-451818222174NAC domain-containing protein 19
3swp_A8e-451818222174NAC domain-containing protein 19
3swp_B8e-451818222174NAC domain-containing protein 19
3swp_C8e-451818222174NAC domain-containing protein 19
3swp_D8e-451818222174NAC domain-containing protein 19
4dul_A8e-451818219171NAC domain-containing protein 19
4dul_B8e-451818219171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4298280.0AM429828.1 Vitis vinifera contig VV78X093199.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265956.30.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-82NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A438I9M00.0A0A438I9M0_VITVI; Transcription factor JUNGBRUNNEN 1
TrEMBLD7SWV70.0D7SWV7_VITVI; Uncharacterized protein
STRINGVIT_19s0027g00840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.19e-85NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]