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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01020033001 | ||||||||
Common Name | LOC100241332, VIT_01s0026g01950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 256aa MW: 29082.7 Da PI: 5.4446 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.3 | 5.3e-18 | 75 | 128 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k GSVIVT01020033001 75 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 128 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.1 | 1.8e-41 | 74 | 164 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k+en++L++++++L++e+ GSVIVT01020033001 74 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAVKAENDALQAQNQKLHAEM 164 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.28E-19 | 64 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 70 | 130 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 73 | 134 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-15 | 75 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.17E-16 | 75 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-19 | 77 | 137 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.3E-6 | 101 | 110 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 105 | 128 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.3E-6 | 110 | 126 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-14 | 130 | 170 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MAFFPANFML QTPREDDHQP PNSLNPILPS CAPQDFHGVA SLLGKRSMSF SGIDVCEETN 60 GEDDLSDDGS QAGEKKRRLN MEQVKTLEKN FELGNKLEPE RKMQLARALG LQPRQIAIWF 120 QNRRARWKTK QLEKDYDLLK RQFEAVKAEN DALQAQNQKL HAEMLALKSR EPTESINLNI 180 KETEGSCSNR SENSSDIKLD ISRTPAIDSP LSTHPTSRPL FPSSIRPAEE SFCNMFCGMD 240 DQSGFWPWLE QQHFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 130 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.199 | 0.0 | bud| fruit| inflorescence| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ384488 | 0.0 | FQ384488.1 Vitis vinifera clone SS0AAG1YF22. | |||
GenBank | KT216258 | 0.0 | KT216258.1 Vitis vinifera cultivar Cabernet Sauvignon homodomain-leucine zipper protein ATHB-13-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002276889.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13 | ||||
Swissprot | Q8LC03 | 1e-114 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | F6HPE2 | 0.0 | F6HPE2_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0026g01950.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-117 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01020033001 |
Entrez Gene | 100241332 |
Publications ? help Back to Top | |||
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