PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01020011001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | TCP | ||||||||
Protein Properties | Length: 318aa MW: 35104.6 Da PI: 9.8435 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 133.1 | 2.6e-41 | 43 | 158 | 2 | 115 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++++ + GSVIVT01020011001 43 PPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAPSHLR 134 789******************************************************************99998889999999888887777 PP TCP 93 saa.kskksqksaasalnlakesr 115 ++ ++++++++++ +n++++ r GSVIVT01020011001 135 TSYyNPNFARNRTEWERNIDESLR 158 777777777777776666666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-40 | 47 | 195 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.636 | 49 | 103 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0042023 | Biological Process | DNA endoreduplication |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEGENGIRRP NFPLQLLEKN KDEVASTASN SGPQISEPPK KPPPKRTSTK DRHTKVDGRG 60 RRIRMPATCA ARVFQLTREL GHKSDGETIE WLLQQAEPAV IAATGTGTIP ANFTSLNISL 120 RSSGSSMSAP SHLRTSYYNP NFARNRTEWE RNIDESLRRI VLPGAKPELR ETCLDVSDAE 180 ATIGRKRQPE QDPSHSQMGN YLLQSGSGSI PSTHSQIPTT FWMVTNPSNQ VMSGDPVWTF 240 PSVNNSSMYR GTMSSGLHFM NFPTPMALLP GQQLGSGIGG SGGFHIPFWC ENNRVILGFE 300 RRIYIYINMG IGSWFLL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.15334 | 0.0 | fruit| inflorescence| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells (PubMed:25527103). Expressed in young proliferating tissues (PubMed:21668538). Expressed in developing embryos, and seeds during germination (PubMed:25655823). {ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:25527103, ECO:0000269|PubMed:25655823}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP14, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in developing leaf blade and specific floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Involved in gynoecium and silique development. Modulates the development of the different tissues of the gynoecium through its participation in auxin and cytokinin responses. Modulates the expression of the cytokinin-responsive genes ARR7 and ARR15. May repress the expression of the auxin biosynthetic genes YUC1 and YUC4 (PubMed:26303297). Acts as negative regulator of anthocyanin accumulation under high light conditions. Modulates the expression of transcription factors involved in the induction of anthocyanin biosynthesis genes (PubMed:26574599). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). {ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:26303297, ECO:0000269|PubMed:26574599}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:21183706). Induced during seed imbibition (PubMed:25655823). Induced by cytokinin (PubMed:26303297). {ECO:0000269|PubMed:21183706, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:26303297}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM465920 | 0.0 | AM465920.2 Vitis vinifera contig VV78X049621.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019076462.1 | 1e-179 | PREDICTED: transcription factor TCP15 | ||||
Swissprot | Q9C9L2 | 5e-62 | TCP15_ARATH; Transcription factor TCP15 | ||||
TrEMBL | A0A438HCY3 | 1e-178 | A0A438HCY3_VITVI; Transcription factor TCP15 | ||||
TrEMBL | F6HPD0 | 1e-178 | F6HPD0_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0026g02200.t01 | 1e-178 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2699 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 2e-50 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01020011001 |
Publications ? help Back to Top | |||
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