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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01019722001 |
Common Name | LOC100247896, VIT_02s0025g03220 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 498aa MW: 54584.3 Da PI: 9.4251 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01019722001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 98.4 | 6.4e-31 | 102 | 186 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea
GSVIVT01019722001 102 RWPRQETLALLKIRSEMDVAFRDATLKGPLWEDVSRKLAELGYSRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 186
8*********************************************************************866665..*******85 PP
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2 | trihelix | 109.9 | 1.6e-34 | 343 | 428 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k evlaLi++r+ +++r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a
GSVIVT01019722001 343 RWPKTEVLALINLRSGLDSRYQEAGPKGPLWEEISAGMQQMGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 428
8*********************************************************************8.99999********85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0008361 | Biological Process | regulation of cell size |
GO:0009414 | Biological Process | response to water deprivation |
GO:0010090 | Biological Process | trichome morphogenesis |
GO:0030308 | Biological Process | negative regulation of cell growth |
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:2000037 | Biological Process | regulation of stomatal complex patterning |
GO:2000038 | Biological Process | regulation of stomatal complex development |
GO:0005634 | Cellular Component | nucleus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 498 aa
Download sequence Send
to blast |
MQQGGSQYGV SSEMTPFAAT TTTTSTRTHV LGGADQQQQQ LKLGDPTLAV AEEASPISSR 60 PPAHSSAGNF DEFLPVGGGL PDEDALAAGD EGDRGGVASG NRWPRQETLA LLKIRSEMDV 120 AFRDATLKGP LWEDVSRKLA ELGYSRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYRF 180 FSQLEALHST ATSNVNPMPV SSVRIPSASP STMGASPMFP PDLSSGMITA PSGSAAATAP 240 AAAPTHTALG ISFSSNTSNS RRMMDFFESL MKQVMEKQEV MQQRFLETIE KREQDRMIRE 300 EAWKRQEMAR LPTGTLVMAI PEQQVPPQDI SSGGGSLESS SSRWPKTEVL ALINLRSGLD 360 SRYQEAGPKG PLWEEISAGM QQMGYKRSAK RCKEKWENIN KYFKKVKESN KKRPEDAKTC 420 PYFHQLDALY RKKLLGSTSG SGGSGGSTYV NPNRPEEQQQ QQPPPQHESA KLDPIPTPYS 480 QDRAALLGEE LRSQKTL*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Vvi.1782 | 0.0 | bud| cell culture| fruit| inflorescence| root |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM468626 | 0.0 | AM468626.1 Vitis vinifera contig VV78X207150.8, whole genome shotgun sequence. |