PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019702001
Common NameLOC104877280, VIT_02s0025g03020
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 633aa    MW: 70493.1 Da    PI: 4.811
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019702001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.1e-5291381128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp GfrF+Ptdeel+++yLk k+eg++ e+ evi+e+d++k+ePwdLp  +++ka++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+
  GSVIVT01019702001   9 LPLGFRFRPTDEELINHYLKLKIEGRHSEV-EVIRELDVCKWEPWDLPglSMIKADDPEWFFFCPRDRKYPNGRRSNRATDAGYWKATGKDR 99 
                        699************************999.99***************6448888999********************************** PP

                NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++s+ +++ +g+kktLvfykgrapkg++t+W+ heyr+
  GSVIVT01019702001 100 TIKSRkSSASIGMKKTLVFYKGRAPKGQRTNWIFHEYRV 138
                        ***9856677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-584158IPR003441NAC domain
PROSITE profilePS5100557.2269158IPR003441NAC domain
PfamPF023651.4E-2610138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MGAVSMESLP LGFRFRPTDE ELINHYLKLK IEGRHSEVEV IRELDVCKWE PWDLPGLSMI  60
KADDPEWFFF CPRDRKYPNG RRSNRATDAG YWKATGKDRT IKSRKSSASI GMKKTLVFYK  120
GRAPKGQRTN WIFHEYRVID SASDSSQGAY VLFRLFYKPN ERIDNPKYDE VEPTGLSPVT  180
TKSSPGDTSS DLVQETEMSD TPTGGESENF ERWLNDKSDN VTPTAPVPVE SCCNGYIPSD  240
VEDHVAEVEE QVSEVYPPLG EDSRSYDGQI DCKVFSPESQ LYPELATAYM GSPFSSDFGD  300
GQTGLRFQDG VSEPEVCLTE FWDEIFNNHD ECSGEESNSK KNSAVGSETL VPGQVSLLPN  360
RPHGDSHTKN GGSNSDTDTD MAQMQYDPEM RASKWSDEYI VGKDHLQMDV SPGYHQPQAS  420
FHFPEFKSGN IGALGDDSIG RDASSAVSAM ASLDALLNNL EESSTQKNHV NYGGDPVGGT  480
GIKIRTRQPL QRQMPDNFVT QGIAPRRIRL QMHKVMYASS NDEQEAQPTL KEVGEGREHP  540
PTSDGPEKES IVGATSRSSR GLKLRLRVNR DGESEGESDN FQVKPSAFLE TVPARRGPST  600
LLVYTVSLSL VITLFLFLTG TWRYLRSYML HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-43816114171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.78950.0bud| cell culture| flower| fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3805250.0FQ380525.1 Vitis vinifera clone SS0ACG52YI09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660382.10.0PREDICTED: protein NTM1-like 9
TrEMBLD7TVV20.0D7TVV2_VITVI; Uncharacterized protein
STRINGVIT_02s0025g03020.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1172646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-127NAC 014