PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019511001
Common NameLOC100253577, VIT_02s0025g01280
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 343aa    MW: 38561.9 Da    PI: 6.5026
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019511001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.1e-30133193259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++eitY+g+H+++
  GSVIVT01019511001 133 DDGYNWRKYGQKDILGAKYPRSYYRCTYRnlhDCWATKQVQRSDEDPSMFEITYRGKHTCT 193
                        8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-29123193IPR003657WRKY domain
PROSITE profilePS5081121.7127190IPR003657WRKY domain
SuperFamilySSF1182903.92E-26131194IPR003657WRKY domain
SMARTSM007741.1E-40132194IPR003657WRKY domain
PfamPF031062.5E-27133192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDTGLKWQQK TLVNELTQGM ELAKQLKIHL SPSSMSQTQE FLVHKIVASF EKALLIVKWS  60
GPVENPQPVA PSSAPQSPLS VNGSPRTVSE DFDKGCKDHH QEHKDFSKKR KTLPTWTDQV  120
RVCSETGLEG PHDDGYNWRK YGQKDILGAK YPRSYYRCTY RNLHDCWATK QVQRSDEDPS  180
MFEITYRGKH TCTQGSHSVP APASPEKQEI KQNHHNDNNH QQQHYIENPL NYSSMASTSY  240
GCMKSETSLF PQPSAFNKDN YDNLLGCYSP TFISPATSDS NCFSLSPCQM SNFGGPPNLQ  300
HSESELTEII SAANSPILNL EFPLDQVDFD PSFPFNTPGF FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-191341901874Disease resistance protein RRS1
5w3x_D9e-191341901874Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.41490.0bud| flower| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4244990.0AM424499.2 Vitis vinifera contig VV78X121610.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272720.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLD7TVE10.0D7TVE1_VITVI; Uncharacterized protein
STRINGVIT_02s0025g01280.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.18e-61WRKY family protein