PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

TALE

Protein Properties

Length: 446aa MW: 49614.6 Da PI: 7.404

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01019399001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.8	4.4e-09	267	304	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + GSVIVT01019399001 267 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 304 564459******************************88 PP
2	BELL	120.1	9.9e-39	129	199	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +elqk+k+kLls+leeVd+rYk+y++q+++v+ssFeavag g+a++Y +lA+ka+SrhFrcL+d i++qi GSVIVT01019399001 129 LMELQKRKSKLLSMLEEVDRRYKHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQI 199 589******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.2E-62	65	197	IPR006563	POX domain
Pfam	PF07526	2.7E-48	71	195	IPR006563	POX domain
PROSITE profile	PS50071	12.179	245	308	IPR001356	Homeobox domain
CDD	cd00086	1.86E-11	248	309	No hit	No description
SMART	SM00389	5.8E-9	248	312	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.38E-17	249	314	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-28	251	314	IPR009057	Homeodomain-like
Pfam	PF05920	5.4E-18	265	304	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0009506	Cellular Component	plasmodesma
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MVDDSSLRCV FPCEGNERPS QGLSLSLSSS NPSSIGLQSF ELRHTHHQEQ QMMQDGFLGK 60 AANLNQGNFQ LRNSKYLGPA QQLLNECCNL GTKQIDPPRQ KAPKTNQWED ENGSSSSCSR 120 KPSLYSLELM ELQKRKSKLL SMLEEVDRRY KHYCDQMKAV VSSFEAVAGN GAARVYSALA 180 SKAMSRHFRC LRDGIVGQIQ ATKKAMGEKD PVAPGTTRGE TPRLRVLDQA LRQQRAFQQM 240 SMMESHPWRP QRGLPERSVS VLRAWLFEHF LHPYPSDVDK HILARQTGLS RSQVSNWFIN 300 ARVRLWKPMV EEMYLEETKE QDNLGSPDGA TDPDDNGRPN PNPQPPVELD FSSYNHHTAG 360 AVSFTNDSAH HNFGGSGVSL TLGLQQHGGS GVSLAFSPAS QSSLFYSRDP IEDCQPVQYS 420 LLDGEGQNLP YRNLMGAQLL HDLAG*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MVDDSSLRCV FPCEGNERPS QGLSLSLSSS NPSSIGLQSF ELRHTHHQEQ QMMQDGFLGK  60
AANLNQGNFQ LRNSKYLGPA QQLLNECCNL GTKQIDPPRQ KAPKTNQWED ENGSSSSCSR  120
KPSLYSLELM ELQKRKSKLL SMLEEVDRRY KHYCDQMKAV VSSFEAVAGN GAARVYSALA  180
SKAMSRHFRC LRDGIVGQIQ ATKKAMGEKD PVAPGTTRGE TPRLRVLDQA LRQQRAFQQM  240
SMMESHPWRP QRGLPERSVS VLRAWLFEHF LHPYPSDVDK HILARQTGLS RSQVSNWFIN  300
ARVRLWKPMV EEMYLEETKE QDNLGSPDGA TDPDDNGRPN PNPQPPVELD FSSYNHHTAG  360
AVSFTNDSAH HNFGGSGVSL TLGLQQHGGS GVSLAFSPAS QSSLFYSRDP IEDCQPVQYS  420
LLDGEGQNLP YRNLMGAQLL HDLAG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	2e-15	254	312	5	63	Homeobox protein Meis2
4xrm_B	2e-15	254	312	5	63	Homeobox protein Meis2
4xrs_A	1e-15	254	311	1	58	Homeobox protein Meis1
4xrs_B	1e-15	254	311	1	58	Homeobox protein Meis1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.1354	0.0	leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269\|PubMed:8521490}.
Uniprot	TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269\|PubMed:8521490}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM453759	0.0	AM453759.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X249169.42, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002279230.2	0.0	PREDICTED: homeobox protein BEL1 homolog
Swissprot	Q38897	1e-142	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	F6HUM6	0.0	F6HUM6_VITVI; Uncharacterized protein
STRING	VIT_02s0025g00200.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP133	16	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-134	TALE family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01019399001

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]