 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSVIVT01019000001 |
| Common Name | LOC100263342, VIT_04s0023g01430 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
| Family |
C2H2 |
| Protein Properties |
Length: 493aa MW: 52133 Da PI: 8.5392 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01019000001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.2 | 1.4e-05 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
GSVIVT01019000001 66 FVCEICNKGFQRDQNLQLHRRGH 88
89*******************88 PP
|
| 2 | zf-C2H2 | 11.2 | 0.0011 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k + +s+ k H + +
GSVIVT01019000001 142 WKCDKCSKKYAVQSDWKAHSKIC 164
58*****************9876 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway |
| GO:0010029 | Biological Process | regulation of seed germination |
| GO:0010431 | Biological Process | seed maturation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 493 aa
Download sequence Send
to blast |
MPVDLDNSSA MTVSTASGEA SVSSTGNQPA PPKPAPKKKR NLPGMPDPDA EVIALSPKTL 60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVRKRVYVCP EPSCVHHEPS 120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRR 180
DSFITHRAFC DALAEESAKT QTQTAVANPN SDEDPKIESP PPPPPPPPPP APAVAPSTAV 240
ISAVLPIQSP ELPENPTQIL EEAPPAATGL NASCSSSTSS SSNATGFSGL SRVMTRPDRP 300
TELTPSSSTE PISLCLSTNH GSSIFGTAGQ ERRQYAPPPQ PAMSATALLQ KAAQMGAAAT 360
NASLLRGFGI VSSTSSSGQQ ENLQWNRQQM EPESTSVAAG LGLGLPCDEG SGLKELMMGT 420
PSLFGPKQTT LDLLGLGMAA SGSPSGGLSA LITSIGGGLD VAAAAATYRG GEFAGKDMGR 480
VSIIFHLYWN FS*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Vvi.8866 | 0.0 | bud| cell culture| flower| fruit| inflorescence| leaf| pedicel| root |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}. |
| Uniprot | TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM481850 | 0.0 | AM481850.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X181906.5, clone ENTAV 115. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP95 | 16 | 242 |
