PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018833001
Common NameLOC100262474, VIT_04s0023g02880
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GATA
Protein Properties Length: 306aa    MW: 33078.6 Da    PI: 4.8246
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018833001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-18224258135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  GSVIVT01018833001 224 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 258
                        *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.4E-854299IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.358218254IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-14218280No hitNo description
SMARTSM004012.0E-15218272IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14222256IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.32E-14223271No hitNo description
PfamPF003201.6E-16224258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440224249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MECVEKALKS SVVRPELAFK LTQQPACMDD MCMGNGQSGV SGDDFSIDDL LDFTNGGIGE  60
GLFQEEDEED EDKGCGSLSP RGELTENDNS NLTTTTFSVK DEFPSVPATE LTVPADDLAD  120
LEWLSHFVED SFSEYSAPFP HGTLTEKAQN QTENPPEPET PLQIKSCLKT PFPAKARSKR  180
ARTGGRVWSM GSPSLTESSS SSSSSSSSLD PEASGSAQPT PHRCSHCGVQ KTPQWRTGPL  240
GAKTLCNACG VRYKSGRLLP EYRPACSPTF SSEIHSNHHR KVLEMRRKKE VTRPESGLAP  300
AVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.19740.0fruit| inflorescence| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4755870.0AM475587.2 Vitis vinifera contig VV78X103852.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272762.10.0PREDICTED: GATA transcription factor 5
SwissprotQ9FH576e-79GATA5_ARATH; GATA transcription factor 5
TrEMBLF6GWQ60.0F6GWQ6_VITVI; GATA transcription factor
STRINGVIT_04s0023g02880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-53GATA transcription factor 7