PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018777001
Common NameVIT_04s0023g03430
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 327aa    MW: 35994 Da    PI: 5.323
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018777001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-095099154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +++ +k+L
  GSVIVT01018777001 50 RKVQKADREKLRRDRLNEHFLELGNTLDPD----RPKNDKATILADTIQMLKDL 99
                       5677889********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.1484999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1149122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-75099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-750103No hitNo description
SuperFamilySSF474598.9E-1350118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-655105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDQWKADDFT QSVAPELAPS NPLSLPSSNN RLPEARQRTE VEAKDSIAAR KVQKADREKL  60
RRDRLNEHFL ELGNTLDPDR PKNDKATILA DTIQMLKDLT AEVNRLKVEC AALSEESREL  120
VQEKNELREE KVALKSDIDN LNVQYQQRLR VMFPWAPIDP SVVMGPSPYS YPVPVPVPSG  180
PIPMHPSLQP FPFFGNQNPS GIPNPCSTFI PYQTPANPPT EVPSAQYASA SHVSSKPDSK  240
SKSSDRERSS NTEKCDESND VATDLELKTP GSSSQQDLLT GEKKGKQSQR KERSATDGSC  300
SSKYSSSQAL QDSSSNSVGD LPKSDK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.236130.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4437080.0AM443708.1 Vitis vinifera contig VV78X054068.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265960.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT231e-84BH121_ARATH; Transcription factor bHLH121
TrEMBLD7SNZ50.0D7SNZ5_VITVI; Uncharacterized protein
STRINGVIT_04s0023g03430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP34011425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-72bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]