PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01018461001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27741.8 Da PI: 9.5874 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.5e-12 | 71 | 122 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ + + Lr+llP ++K +e Av+YIk+Lq GSVIVT01018461001 71 KIVHRDVERQRRQDMATLYTSLRSLLPLeY---IKGKRAISEHMNGAVNYIKHLQ 122 6679************************77...9********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-13 | 66 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.192 | 69 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-8 | 70 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-9 | 71 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.29E-10 | 74 | 126 | No hit | No description |
SMART | SM00353 | 4.3E-4 | 75 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-4 | 119 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MFPLHQGNEL LFRIPYTPSK QYIIQQDMIL DHASLEASNL SNHKGKSPNR KLFAQDNNDE 60 ISNDGKKKKK KIVHRDVERQ RRQDMATLYT SLRSLLPLEY IKGKRAISEH MNGAVNYIKH 120 LQKKIKELGE KRNELKSLAN SSSRNSSGNF VTVCPCWGGV EIVVSSGGEK EGMPLSRALE 180 TLLEEGLSVI SCISTKVNGR LLHTIHCEVS DITSIDLHGL QQQLSDQVLP HLDKLPSNTA 240 LRNIPTI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM456906 | 1e-176 | AM456906.2 Vitis vinifera contig VV78X030623.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002271141.1 | 0.0 | PREDICTED: transcription factor bHLH118 | ||||
Swissprot | Q9FLI0 | 4e-46 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | F6HAQ7 | 1e-159 | F6HAQ7_VITVI; Uncharacterized protein | ||||
STRING | VIT_16s0022g02240.t01 | 1e-160 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1638 | 8 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25410.1 | 6e-38 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01018461001 |
Publications ? help Back to Top | |||
---|---|---|---|
|