PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01018459001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 25944.7 Da PI: 10.0098 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 5e-10 | 65 | 112 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++ + + Lr+llP ++K s ++ +Av+YI++Lq GSVIVT01018459001 65 RDMERQRRQEMANLNASLRSLLPLeY---VKGKRSISDHMHEAVNYINHLQ 112 579*********************77...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.38E-7 | 57 | 116 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-12 | 58 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.424 | 59 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-9 | 64 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-7 | 65 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MTREYSAIQS NQNKRNLNAS THSIAFGLGN NLPKNMEKSP RQKVVLTPGK NTENTSSSNK 60 KILRRDMERQ RRQEMANLNA SLRSLLPLEY VKGKRSISDH MHEAVNYINH LQMKIQDLGT 120 KRDELRNQSN MSACDSESGS SYKRSRHCVI VSPCMDGVEI LISGGFKEGL LLSKVMEVLL 180 EEGLGVHRCV STKVNEGLLH TMNCKQVSDP TGFDLCGLRQ KLWNAVTPSS R* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM449853 | 0.0 | AM449853.2 Vitis vinifera contig VV78X262061.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019081510.1 | 1e-141 | PREDICTED: transcription factor bHLH118 | ||||
TrEMBL | A5B7X6 | 1e-143 | A5B7X6_VITVI; Uncharacterized protein | ||||
STRING | VIT_16s0022g02270.t01 | 1e-143 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1638 | 8 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25400.1 | 3e-27 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01018459001 |