PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018226001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 693aa    MW: 78291.3 Da    PI: 8.9278
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018226001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.2e-18554603255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  GSVIVT01018226001 554 TYRGVRMRN-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 603
                        69****998.**********854...6**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.7E-358109IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.3E-3610102IPR001623DnaJ domain
HamapMF_0115226.59210389IPR012724Chaperone DnaJ
SMARTSM002712.7E-261266IPR001623DnaJ domain
PROSITE profilePS5007623.3541374IPR001623DnaJ domain
PfamPF002269.8E-221371IPR001623DnaJ domain
CDDcd062572.85E-101463IPR001623DnaJ domain
PRINTSPR006253.7E-221533IPR001623DnaJ domain
PRINTSPR006253.7E-224666IPR001623DnaJ domain
PROSITE patternPS0063605170IPR018253DnaJ domain, conserved site
PRINTSPR006253.7E-226685IPR001623DnaJ domain
SuperFamilySSF494935.76E-17119153IPR008971HSP40/DnaJ peptide-binding
CDDcd107472.44E-42119345No hitNo description
Gene3DG3DSA:2.60.260.209.2E-28119148No hitNo description
PfamPF015561.7E-38122343IPR002939Chaperone DnaJ, C-terminal
PROSITE profilePS5118823.285135219IPR001305Heat shock protein DnaJ, cysteine-rich domain
SuperFamilySSF579384.71E-16145216IPR001305Heat shock protein DnaJ, cysteine-rich domain
CDDcd107191.56E-20148214No hitNo description
PfamPF006842.2E-14148214IPR001305Heat shock protein DnaJ, cysteine-rich domain
Gene3DG3DSA:2.10.230.101.1E-16149214IPR001305Heat shock protein DnaJ, cysteine-rich domain
Gene3DG3DSA:2.60.260.209.2E-28216260No hitNo description
SuperFamilySSF494935.76E-17220262IPR008971HSP40/DnaJ peptide-binding
SuperFamilySSF494931.83E-18265345IPR008971HSP40/DnaJ peptide-binding
Gene3DG3DSA:2.60.260.208.6E-29265344No hitNo description
PROSITE profilePS5103222.906554611IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-20554612IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-30554612IPR001471AP2/ERF domain
PfamPF008476.3E-12554603IPR001471AP2/ERF domain
SMARTSM003802.7E-36554617IPR001471AP2/ERF domain
CDDcd000188.90E-32555613No hitNo description
PRINTSPR003671.1E-9555566IPR001471AP2/ERF domain
PRINTSPR003671.1E-9577593IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006457Biological Processprotein folding
GO:0009408Biological Processresponse to heat
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005524Molecular FunctionATP binding
GO:0031072Molecular Functionheat shock protein binding
GO:0046872Molecular Functionmetal ion binding
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MFGRPPRRSD STKYYDILGV SKNANQDELK KAYKKAAIKN HPDKGGDPEK FKELSQAYDV  60
LSDPDKREIY DQYGEDGLKE GMGGGGGFHN PVDIFESFFG GGAFGGGGSS RGRRQKRGED  120
VVHTLKVSLE DLYNGTSKKL SLSRNVMCPK CKGKGSKSGA SGRCYGCQGS GMKITTRQIA  180
PGMIQQMQHV CHECRGSGEV ISERDRCPQC KGNKVSTEKK VLEVHVEKGM QHGERIVFQG  240
EADQAPDTIT GDIVFVLQLK DHAKFKRKYD DLYVEHTLSL TEALCGFQFA LTHLDGRQLL  300
IKSNPGEIIK PDQYKAINDE GMPHHQRPFM KGKLYIHFDV EFPESGILSP DQCKALESIL  360
PQKRSKQISA MEVDEAEETT LYDVNIEEEM RRKQQQQQHE AYDEDDDDFG APRVHGNSSL  420
LNYSRNFKLG QLGYWCAFIC IPRNSFRVLQ LKERGYLHCI NVSAPFLTCI FQEGSLQVGT  480
RVPQLFWTHV RLYREMFWDS MVKKIKNKIK IMSFYFSWHD DMPRQGGRKV QGMKNGNESR  540
KRQKTENDGK QHPTYRGVRM RNWGKWVSEI REPKKKSRIW LGTYPTAEMA ARAHDVAALA  600
IKGSSPHLNF PELAHALPRP ASTSPKDIQA AAAEAANTTF SQPDETEGFV IRVLMLLTPM  660
LVVTHISILG YPFGETLMQL TLNLMLSHFL YI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1nlt_A2e-681083571248Mitochondrial protein import protein MAS5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.79770.0bud| cell culture| flower| fruit| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtInvolved in disease resistance. Acts as negative regulator of innate immunity to the rice blast fungus (Magnaporthe oryzae). Acts as negative regulator of the pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) response through the inhibition of reactive oxygen species (ROS) accumulation and expression of defense-related genes. May function via the ubiquitin-proteasome degradation pathway. {ECO:0000269|PubMed:28220688}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by a compatible race of the rice blast fungus (Magnaporthe oryzae). {ECO:0000269|PubMed:28220688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3820030.0FQ382003.1 Vitis vinifera clone SS0ABG75YM11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275918.10.0PREDICTED: dnaJ protein homolog 2
SwissprotQ0JB880.0DJA6_ORYSJ; Chaperone protein dnaJ A6
TrEMBLA0A438IK720.0A0A438IK72_VITVI; Chaperone protein dnaJ A6
TrEMBLF6GV820.0F6GV82_VITVI; Uncharacterized protein
STRINGVIT_15s0021g02090.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-44ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lu L, et al.
    Pc4, a putative movement protein of Rice stripe virus, interacts with a type I DnaJ protein and a small Hsp of rice.
    Virus Genes, 2009. 38(2): p. 320-7
    [PMID:19130198]
  3. Sarkar NK,Thapar U,Kundnani P,Panwar P,Grover A
    Functional relevance of J-protein family of rice (Oryza sativa).
    Cell Stress Chaperones, 2013. 18(3): p. 321-31
    [PMID:23160806]
  4. Zhong X,Yang J,Shi Y,Wang X,Wang GL
    The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.
    Mol. Plant Pathol., 2018. 19(3): p. 607-614
    [PMID:28220688]