PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018205001
Common NameLOC100246212, VIT_15s0021g02290
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SBP
Protein Properties Length: 405aa    MW: 44853.5 Da    PI: 7.5006
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018205001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1308.5e-41161238178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk+++
  GSVIVT01018205001 161 RCQVEGCHVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHAVSEFDDSKRSCRRRLAGHNERRRKSSH 238
                        6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.9E-35156223IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.513159236IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-38160241IPR004333Transcription factor, SBP-box
PfamPF031105.1E-32162235IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MENGGNSFNG NRGQNGNSGS HLAWDVRDLG ASRFDWNCTG NSFNDDAATA TATDAPTQPE  60
AGVGHALMFP HQATADVHHN QYYHQHNHHH HHQQSLYGGD GSHLHPDPHL MCLKLGKRHY  120
FEDSTPGIST DKRGRPYYSG GSSQSSATAV SVVGSPATVP RCQVEGCHVA LVNAKDYHRR  180
HKVCEMHSKA PKVVVLGLEQ RFCQQCSRFH AVSEFDDSKR SCRRRLAGHN ERRRKSSHDS  240
VARNPSQAAN KLMTGRFAYL SSPTGRALSL LSSKSDSWVS SAELSLRSSA ALRELIAENR  300
AAILARQLIL DRDWHWHHHG MEDSGGEQPG SDSLMPHQHQ MFPGSRSWER FHEANGHVTL  360
DLMQAPSSAF GLLSVREKSK EEEEECSELW NSLEGTHVLP NTFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-291622351184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.58670.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4668000.0AM466800.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X004301.10, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661347.10.0PREDICTED: squamosa promoter-binding-like protein 7 isoform X1
TrEMBLF6GV740.0F6GV74_VITVI; Uncharacterized protein
STRINGVIT_15s0021g02290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-36squamosa promoter binding protein-like 2