PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018094001
Common NameLOC100264830, VIT_05s0020g04620
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 314aa    MW: 33323.6 Da    PI: 5.8208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018094001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-10162206554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  GSVIVT01018094001 162 HSIAERLRRERIAERMKALQELVPSS-----NKTDRAAMLDEIVDYVKFL 206
                        99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-15155216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-11155211No hitNo description
PROSITE profilePS5088816.221157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-15159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7162206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MATNPPEGYA DDFLEQILAI PSYPGHDPNM VGTGSTMVLQ LSSGDGSGHV AGGGFQGPVF  60
PLGLSLESGI PATQVAPGSG ERFRDDVDAR GSSGRSERES VHLDGLFPAY GHVQSLSVRP  120
AVPQVHQAFH GQPTPVPITA APHPPAIRPR VRARRGQATD PHSIAERLRR ERIAERMKAL  180
QELVPSSNKT DRAAMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVAQLVAD IPLPAVEGET  240
GEGGSNQQAW DKWSNDGTER EVAKLMEEDV GAAMQFLQSK ALCIMPISLA AAIYPAHQTD  300
TPTLIKPEPN APS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3832860.0FQ383286.1 Vitis vinifera clone SS0ABG24YO06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284047.10.0PREDICTED: transcription factor UNE12
SwissprotO227686e-95UNE12_ARATH; Transcription factor UNE12
TrEMBLD7T7800.0D7T780_VITVI; Uncharacterized protein
STRINGVIT_05s0020g04620.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.26e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]